DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vav and RhoGAP1A

DIOPT Version :9

Sequence 1:NP_001097030.1 Gene:Vav / 32920 FlyBaseID:FBgn0040068 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_001284725.1 Gene:RhoGAP1A / 5740235 FlyBaseID:FBgn0025836 Length:1404 Species:Drosophila melanogaster


Alignment Length:868 Identity:178/868 - (20%)
Similarity:311/868 - (35%) Gaps:270/868 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 IPPDHKAAQPDAEIRIL-AMTLRDGVLLC------NLVIHLDPS---------SLDPR-EFNRK- 80
            ||....::.|..|..:: .|.......||      :|..::.||         :||.: ...|| 
  Fly   319 IPSQQLSSSPKRETYMINTMPSSSSGSLCIDSLGNSLERNIKPSDILRQKSSDNLDSKYSAKRKT 383

  Fly    81 -PQMAQFLCSKNIKLFLDVCHNNFGIRDADLFEPTMLYDLTNFHRVLITLSKLSQCRKV------ 138
             |::::|:...|.:|..::....  :..||..|.|...|           |..|.|..:      
  Fly   384 TPELSKFVNVNNPELMEELGRKM--VSKADSLEQTRRND-----------SSPSGCGSLGRTSST 435

  Fly   139 --QQLHPDLIGFNLQLSPTERSHSDEAIYKDLHSTDLNMRKTSSIDASASSSAEYYDRTSQSGSL 201
              :.|.|...|  :..|||.                 ::.||..:..:.|||....:|.|...::
  Fly   436 PGRSLTPGRTG--VGASPTG-----------------SLSKTGKLAMADSSSTSSLERRSCLQAV 481

  Fly   202 DENSDITIENGTEDIDDYIEDSLSNMCDSTIDNDAEDAGVETPLLSDCQG-SHVRELSFDLALDV 265
            |  :||    |||.     .:|.:|.         ...|.:..|.|  || |.|:..|:    :.
  Fly   482 D--ADI----GTES-----RESGANQ---------RSVGSKESLTS--QGISEVQIKSY----ES 520

  Fly   266 VSSTTDGASNAVTPTPESYARQSQS---PLAAAAP---SVPVSAAPGPPM----GRLVSTSS--- 317
            |||.:..::.||.      ::||.:   .||...|   |||:....|..:    ||..|:||   
  Fly   521 VSSLSSESAKAVA------SQQSAAAGGALAECEPYYDSVPLDNGDGEYVFIKPGRTGSSSSRDD 579

  Fly   318 ---SSSSLLVSESQRLQRAAAAVYNY-------------RSSMASTEHEY-----AYIYSEDDEK 361
               ..||:|...:.....:.....||             |||...::.||     ....|.||: 
  Fly   580 LSTPGSSILPLPNVADPESPGRTSNYVNIDFFLQQGIETRSSSLDSDGEYEGPPILRTISHDDQ- 643

  Fly   362 VYEDLCYVTFQAKAKPEVTTDNIACNGTGYDHTNTKEEEVYQDL------CALHRTSRSQTASST 420
                              ||            |.|....:.::|      |...|.::.::    
  Fly   644 ------------------TT------------TQTTPGAIRKNLVSAILVCGNARGAKIRS---- 674

  Fly   421 SFEQRDYVIRELIDTESNYLDVLTAL---KTKFMGPL---ERHLNQDELRLIFPRIRELVDIHTK 479
                   ::..:|.:|:.|::.|..:   |......|   :..:.::|...||.:|.||.|:||.
  Fly   675 -------ILSSIIQSETIYVECLNKMMQYKKAIHATLTTSQPVIREEEENTIFFKIDELYDLHTG 732

  Fly   480 FLDKLRESLT-PNAKVKMAQVFLDFREPFLIYGEFCSLLLGAIDYLADVCKKN-----QIIDQLV 538
            ||..|:..:: ....|.:.:.|....|.|.:|..|......||:.:.. |..|     :|:..:|
  Fly   733 FLSDLKTIVSHEGGDVLIGEPFRRLAEMFDLYSAFLHNYKNAIETVKK-CSANNPQFKKIVSTIV 796

  Fly   539 QKCERDYNVGKLQLRDILSVPMQRILKYHLLLDKLVKETSPLHDDYRSLERAKEAMIDVSQYINE 603
            ...:.:.:   |.|.|:|..|:.|:....|:.:.|::||...|.|::.|.:|::.   :..::|:
  Fly   797 LNLQTEQS---LTLEDLLHKPVARVQINALVFNDLLRETPNAHPDHQPLRQAQKI---IQMFLNQ 855

  Fly   604 VKRDSDHLVIIQKVKDSICDIHLLQNGNGSDLLQYGRL--LLDGELHIKAHEDQKTKLRYAFVFD 666
            ..      |:.|:       :.:..|.|...:::...:  |:||.          .|||:.|:|:
  Fly   856 FN------VVNQR-------LPIESNRNLRRMVRNSFIVELVDGH----------RKLRHLFLFN 897

  Fly   667 KILIMVKALHIKTGDMQYTYR--------DSHNLADYRVEQSHSR----RTIGRDTRF------- 712
            .::...|...:....:.|..:        ..:..||..||...|.    ..:.|:.|.       
  Fly   898 DVIACAKYKALGRDRIDYELKWFIPLKDVSIYEEADPAVELKESSPANISQVKRNLRSVRDQLAM 962

  Fly   713 --------------KY---------QLLLA---------RKSGKTAFTLYLKSEHERDKWRKALT 745
                          ||         ||:||         .|:.....|.:|.|:.||.:|..::.
  Fly   963 EVANSGSGAFRSGDKYRRKLADLESQLVLATPNLVLRLGNKANNKTITFFLSSDFERTQWIDSIL 1027

  Fly   746 EAMESLEPPGCQSTDHKMEIYTF 768
            ...:....||. :|.:.:|:..|
  Fly  1028 SLKQKCNLPGA-NTINSLEVTAF 1049

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VavNP_001097030.1 CH 20..132 CDD:278723 24/116 (21%)
RhoGEF 428..603 CDD:279015 44/186 (24%)
PH_Vav 624..753 CDD:269930 32/181 (18%)
PH 641..749 CDD:278594 30/160 (19%)
C1_1 761..804 CDD:278556 2/8 (25%)
SH2_Vav_family 824..934 CDD:198193
SH3 940..993 CDD:302595
RhoGAP1ANP_001284725.1 RhoGEF 675..857 CDD:214619 45/188 (24%)
PH_BCR_arthropod 851..1037 CDD:270174 35/208 (17%)
C2 1079..1187 CDD:301316
RhoGAP 1203..1398 CDD:295372
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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