DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vav and arhgef1b

DIOPT Version :9

Sequence 1:NP_001097030.1 Gene:Vav / 32920 FlyBaseID:FBgn0040068 Length:1001 Species:Drosophila melanogaster
Sequence 2:XP_021322373.1 Gene:arhgef1b / 557983 ZFINID:ZDB-GENE-060616-136 Length:1082 Species:Danio rerio


Alignment Length:642 Identity:134/642 - (20%)
Similarity:248/642 - (38%) Gaps:113/642 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 KTSSIDASASSSAEYYDRTSQSGSL---DENSDITIENGTEDIDDYIEDSLSNMCDSTIDNDAED 238
            |.|.:|..|..:.:...|.|.|.|:   ...:.||:...|.                     ..:
Zfish   297 KQSRLDFEAKQNKQPPHRVSVSDSVTPPGRKTGITVSGSTH---------------------GSE 340

  Fly   239 AGVETPLLSDCQGSHVRELSFDLALDVVSSTTDGASNAVTPTPESYARQSQSPLAAAAPSV--PV 301
            :..|.|:          .:|...:.|..:.|....:|...|.|.|...:..........|:  |:
Zfish   341 SSEELPI----------SVSVTPSPDFQTDTVGIINNRTDPKPASEGGEVSPVSTGGTVSICEPL 395

  Fly   302 SAAPGPP-----MGRLVSTSSSSSSLLVSESQRLQRAA---AAVYNYRSSM----ASTEHEYA-- 352
            :....||     .||....:...|..|..|.:..:|..   |.....||.:    .||.|..:  
Zfish   396 AVIDVPPEDIQDSGRKKPRNVRRSESLCVERRHSRRGGSTRAKQSRSRSDVDLQSTSTSHPLSPS 460

  Fly   353 --YIYSEDDEKVYE-DLCYVTF-----QAKAKPEVTTDNIACNGTGYDHTNTKEEEVYQDLCALH 409
              :..|.:.:|..| .|...||     |.:.:|.:..       ...|..|.:|....:   :||
Zfish   461 PQHSVSVEGDKTPEIALLTPTFVPAPQQEEIEPRLLE-------LEQDPLNWRELASSE---SLH 515

  Fly   410 RTSRSQTASSTSFEQRDYVIRELIDTESNYLDVLTALKTKFMGPLER--HLNQDELRLIFPRIRE 472
            :.|:.:.       :|..||.||..||..::.:|:.|:|.|..|||:  ::..:|:..||..:.:
Zfish   516 KLSKKEA-------KRQEVINELFVTEQAHVRMLSVLQTVFSRPLEKQEYMTANEVATIFSSLDD 573

  Fly   473 LVDIHTKF---LDKLRES---LTPNAKVKMAQVFLDFREPFL--IYGEFCSLLLGAIDYLADVCK 529
            ::::|..|   |.||||.   :.......:...|......:.  :...|||....|::.:....|
Zfish   574 IIEMHYVFYENLKKLREEDEYIVKTISTPLLNRFSGSEGEWFQKLTARFCSYQSWALEQIKSRQK 638

  Fly   530 KNQIIDQLVQKCERDYNVGKLQLRDILSVPMQRILKYHLLLDKLVKETSPLHDDYRSLERAKEAM 594
            |:...:..:.:.|......:|||:||:.:.|||:.||.|||:.:.|.|... .:...:.:|.|:.
Zfish   639 KDPRFNAFILEAESKPQCRRLQLKDIIPIEMQRLTKYPLLLENIAKNTEDA-TEKEKINQAAESC 702

  Fly   595 IDVSQYINEVKRDSDHLVIIQKVKDSICDIHLLQNGNGSDL--------LQYGRLLLDGELHIKA 651
            ..:..::||..:..::|:|::..:..: |...|:..|  :|        |....:|.:|.|..:.
Zfish   703 RKILNHVNEEVKQMENLLILKDYQRRL-DTSGLKPSN--ELYSEYKTIDLTNRTMLFEGPLTWRV 764

  Fly   652 HEDQKTKLRYAFVFDKILIMVKALHIKTGDMQYTYRDSHNLADYRVEQSHS---------RRTIG 707
            .:::...:....:.|.:::..|    :...|....:...|:|....:|..|         .|.:.
Zfish   765 TKEKAIDVHCVLLSDLLVLFQK----QDDKMLLKCQSKSNIAVQEGKQMLSPIIKLESVFLREVA 825

  Fly   708 RDTRFKYQLLLARKSGKTAFTLYLKSEHERDKWRKALTEAMESLEPPGCQSTDHKME 764
            .|.:..| ::....||...:.|..:|..||..|.:|:..|::.|:.....:|  |:|
Zfish   826 TDPKALY-VIFTWDSGAQIYELVAQSVGERKNWTEAIKSAVDELKKASKSNT--KLE 879

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VavNP_001097030.1 CH 20..132 CDD:278723
RhoGEF 428..603 CDD:279015 48/184 (26%)
PH_Vav 624..753 CDD:269930 27/145 (19%)
PH 641..749 CDD:278594 22/116 (19%)
C1_1 761..804 CDD:278556 2/4 (50%)
SH2_Vav_family 824..934 CDD:198193
SH3 940..993 CDD:302595
arhgef1bXP_021322373.1 RGS_p115RhoGEF 74..266 CDD:188709
RhoGEF 524..710 CDD:238091 49/186 (26%)
PH_p115RhoGEF 744..868 CDD:275429 23/128 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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