DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vav and ARHGEF4

DIOPT Version :9

Sequence 1:NP_001097030.1 Gene:Vav / 32920 FlyBaseID:FBgn0040068 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_001354422.1 Gene:ARHGEF4 / 50649 HGNCID:684 Length:1876 Species:Homo sapiens


Alignment Length:556 Identity:119/556 - (21%)
Similarity:212/556 - (38%) Gaps:117/556 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   271 DGAS---NAVTPTPESYARQSQS-PLAAAAPS----------VPVSAAPGPPMGRLVSTSSSSSS 321
            ||..   ..:..:|||.....:| ||:.:||:          .|.:|.|...:...|......|.
Human  1283 DGVKCWRKTIITSPESLNLPRRSHPLSQSAPTGLNHMGWPEHTPGTAMPDGALDTAVCADEVGSE 1347

  Fly   322 LLVSESQRLQRAAAAVYNYRSSMASTEHEYAYIYSEDDEKVYEDLCYVTFQAKAKPEVTTDNIAC 386
                         ..:|:   .:.|:.|.|::.....::....:|            ::..::.|
Human  1348 -------------EDLYD---DLHSSSHHYSHPGGGGEQLAINEL------------ISDGSVVC 1384

  Fly   387 NGTGYDHTNTKEEE---------------------------------------VYQDLCA----- 407
            ....:||....::|                                       |.||..|     
Human  1385 AEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDDAP 1449

  Fly   408 LHRTSRSQ----TASSTSFEQRDYVIRELIDTESNYLDVLTALKTKFMGPLERH---LNQDELRL 465
            |...|.::    .|.|:..:.|..||.|::.||.:|:..|..:...::....:.   .::::||.
Human  1450 LAGNSGAEDGGAEAQSSKDQMRTNVINEILSTERDYIKHLRDICEGYVRQCRKRADMFSEEQLRT 1514

  Fly   466 IFPRIRELVDIHTKFLDKLRESLT---PNAKVKMAQVFLDFREPFLIYGEFCSLLLGAIDYLADV 527
            ||..|.::......|:..|.:...   |:.. ::...||:.:..|.||.|:|:....|...|:.:
Human  1515 IFGNIEDIYRCQKAFVKALEQRFNRERPHLS-ELGACFLEHQADFQIYSEYCNNHPNACVELSRL 1578

  Fly   528 CKKNQIIDQLVQKCERDYNVGKLQLRDILSVPMQRILKYHLLLDKLVKETSPLHDDYRSLERAKE 592
            .|.::.: ...:.|.....:..:.|...|..|:|:|.||.|.|.:|:|.|.|.|.|::.:|.|..
Human  1579 TKLSKYV-YFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALH 1642

  Fly   593 AMIDVSQYINEVKRDSDHLVIIQKVKDSICDIHLLQNGNGSDLL-QYGRLLLDGELHIKAHEDQK 656
            ||.:|:|.|||.||..:::..|.:.:.||      ::..|.||| :...|:..|||........|
Human  1643 AMKNVAQLINERKRRLENIDKIAQWQSSI------EDWEGEDLLVRSSELIYSGELTRVTQPQAK 1701

  Fly   657 TKLRYAFVFDKILIMVKALHIKTGDMQYTYR-DSHNLADYRVEQSHSRRTIGRD----TRFKYQL 716
            ::.|..|:||..||..|...::...:.|..| |...|....:|.       |:|    ...|...
Human  1702 SQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLED-------GKDRDLHVSIKNAF 1759

  Fly   717 LLARKSGKTAFTLYLKSEHERDKWRKALTEAMESLE 752
            .|.|.:...:..|..:...::.:|.||.....|.::
Human  1760 RLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQ 1795

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VavNP_001097030.1 CH 20..132 CDD:278723
RhoGEF 428..603 CDD:279015 48/180 (27%)
PH_Vav 624..753 CDD:269930 31/135 (23%)
PH 641..749 CDD:278594 26/112 (23%)
C1_1 761..804 CDD:278556
SH2_Vav_family 824..934 CDD:198193
SH3 940..993 CDD:302595
ARHGEF4NP_001354422.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1291
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.940

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