DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vav and Lrch1

DIOPT Version :9

Sequence 1:NP_001097030.1 Gene:Vav / 32920 FlyBaseID:FBgn0040068 Length:1001 Species:Drosophila melanogaster
Sequence 2:XP_006252373.1 Gene:Lrch1 / 502020 RGDID:1595678 Length:744 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VavNP_001097030.1 CH 20..132 CDD:278723
RhoGEF 428..603 CDD:279015
PH_Vav 624..753 CDD:269930
PH 641..749 CDD:278594
C1_1 761..804 CDD:278556
SH2_Vav_family 824..934 CDD:198193
SH3 940..993 CDD:302595
Lrch1XP_006252373.1 leucine-rich repeat 60..82 CDD:275380
leucine-rich repeat 83..105 CDD:275380
LRR_RI <99..214 CDD:238064
LRR_8 105..161 CDD:290566
leucine-rich repeat 106..128 CDD:275380
leucine-rich repeat 129..144 CDD:275380
leucine-rich repeat 151..173 CDD:275380
LRR_8 172..252 CDD:290566
leucine-rich repeat 174..196 CDD:275380
leucine-rich repeat 197..217 CDD:275380
leucine-rich repeat 219..241 CDD:275380
leucine-rich repeat 242..261 CDD:275380
CH 596..685 CDD:214479
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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