DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vav and LRCH4

DIOPT Version :9

Sequence 1:NP_001097030.1 Gene:Vav / 32920 FlyBaseID:FBgn0040068 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_002310.2 Gene:LRCH4 / 4034 HGNCID:6691 Length:683 Species:Homo sapiens


Alignment Length:73 Identity:24/73 - (32%)
Similarity:35/73 - (47%) Gaps:11/73 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 LAMTLRDGVLLCNLVIHLDPSSL------DPREFNRKPQMAQFLCSKNIKLFLDVCHNNFGIRDA 108
            ||..|..||:||.|...|.|.|:      .|    ..|:::.....||::.||:.| ...|:.:|
Human   560 LAEALASGVILCQLANQLRPRSVPFIHVPSP----AVPKLSALKARKNVESFLEAC-RKMGVPEA 619

  Fly   109 DLFEPTML 116
            ||..|:.|
Human   620 DLCSPSDL 627

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VavNP_001097030.1 CH 20..132 CDD:278723 24/73 (33%)
RhoGEF 428..603 CDD:279015
PH_Vav 624..753 CDD:269930
PH 641..749 CDD:278594
C1_1 761..804 CDD:278556
SH2_Vav_family 824..934 CDD:198193
SH3 940..993 CDD:302595
LRCH4NP_002310.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..34
LRR 1 43..64
leucine-rich repeat 46..69 CDD:275380
LRR 2 69..90
leucine-rich repeat 70..92 CDD:275380
LRR_8 92..148 CDD:290566
LRR_4 92..131 CDD:289563
LRR 3 92..114
leucine-rich repeat 93..115 CDD:275380
LRR_RI <103..>245 CDD:238064
LRR 4 115..136
leucine-rich repeat 116..131 CDD:275380
LRR 5 137..158
LRR_8 138..194 CDD:290566
leucine-rich repeat 138..160 CDD:275380
LRR 6 160..182
leucine-rich repeat 161..183 CDD:275380
LRR_8 182..239 CDD:290566
LRR 7 183..205
leucine-rich repeat 184..204 CDD:275380
leucine-rich repeat 206..228 CDD:275380
LRR 8 206..226
LRR 9 228..249
leucine-rich repeat 229..247 CDD:275380
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 268..292
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 326..436
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 449..539
CH 537..627 CDD:278723 23/71 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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