DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vav and RtGEF

DIOPT Version :10

Sequence 1:NP_001097030.1 Gene:Vav / 32920 FlyBaseID:FBgn0040068 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_001097184.2 Gene:RtGEF / 35306 FlyBaseID:FBgn0015803 Length:1310 Species:Drosophila melanogaster


Alignment Length:513 Identity:110/513 - (21%)
Similarity:189/513 - (36%) Gaps:130/513 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   350 EYAYIYSEDDEKVYEDLCYVTFQAKAKPEVTT-----DNIACNGTGYDHTNTKEEEVYQDLC--- 406
            ||:::.|.:||     ||:      .|.:|.|     |.....||..|.|...... |.:.|   
  Fly    10 EYSFMGSNNDE-----LCF------QKGDVITVTQREDGGWWEGTLNDKTGWFPSN-YVNECKVQ 62

  Fly   407 -ALHRTSRSQTASSTSFEQRDYVIRELIDTESNYLDVLTALKTKFMGPLERH--LNQDELRLIFP 468
             .|..|.|......   |.|..|:::|:|:|..::..|..|...|:.|:::.  |:|||...:..
  Fly    63 LPLTETIRPPEEIQ---EYRSVVLKDLLDSERAHVAELQGLLENFLEPMQQTQILSQDEYAQLMC 124

  Fly   469 RIRELVDIHTKFLDKLRESLTPNAKVKMAQVFLDFREPFL--IYGEFCSLLLGAIDYLADVCKKN 531
            ...|:|..|...|.::.|     ...::.::||. ..|.:  ::..:|:....||..|      :
  Fly   125 NFVEIVRTHEDLLIQIEE-----CNDRVGKLFLT-SAPLMKKVHQAYCAAHPKAIVIL------D 177

  Fly   532 QIIDQLVQKCERD--YNVGKLQLRDILSVPMQRILKYHLLLDKLVKETSPLHDDYRSLERAKEAM 594
            :..|:|.:..||.  ...|.|.|...||.|.:|:.||..:|.:|.:.....|.|....:|:....
  Fly   178 KYKDELEKYMERQGAATPGLLVLTTGLSKPFRRLDKYSAMLQELERHMESSHPDRGDTQRSVAVY 242

  Fly   595 IDVSQYINEVKRDSDHLVIIQKVKDSICDIHLLQNGNGSDLLQYGRLLLDGELHIKA-HEDQKTK 658
            .|::...:..:|..:  :.:|.:...:      :...|.:|...|.::..|.:.:.| |.|    
  Fly   243 KDIAATCSATRRQKE--LELQVLTGPV------RGWQGQELSTLGDIIHMGSVAVGADHRD---- 295

  Fly   659 LRYAFVFDKILIMVK-----ALHIKTGDMQYTYRDSHNLADYRVEQSHSRRTIGRDTRFKYQLLL 718
             ||..:|.:.|:.:.     :..|..|.:..|     .:...|:|.:.:.               
  Fly   296 -RYFVLFPQTLLFLSVSQRMSAFIYEGKLPLT-----GIIVNRLEDTDAL--------------- 339

  Fly   719 ARKSGKTAFTL----------YLKSEHERDKWRKALTEAMESLEPPGCQ---------STDHKME 764
                 |.||.:          ..:..:|.:||.:.|.....|| |.|.:         |..|   
  Fly   340 -----KNAFEISSPLIDRIVAVCQGPNEANKWVELLNANNPSL-PMGIKRQLSNLSNSSLGH--- 395

  Fly   765 IYTFDAPTTCRHCSKFLKGRIHQGY--RCKVCQISVHKGCISSTGRCKQNP--VSVPP 818
                   ....|.|:.|..|   ||  |..:|       ...|:..|...|  |::||
  Fly   396 -------LNAAHLSQHLDSR---GYCTRFSLC-------AYYSSPPCHVRPLRVTLPP 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VavNP_001097030.1 CH_VAV 19..135 CDD:409050
RhoGEF 428..602 CDD:459876 43/179 (24%)
PH_Vav 624..753 CDD:269930 25/144 (17%)
C1_VAV 759..810 CDD:410360 10/52 (19%)
SH2_Vav_family 824..934 CDD:198193
SH3 940..993 CDD:473055
RtGEFNP_001097184.2 SH3_PIX 6..58 CDD:212810 16/59 (27%)
RhoGEF 79..249 CDD:238091 44/181 (24%)
PH_Cool_Pix 281..376 CDD:269932 20/124 (16%)
Blue background indicates that the domain is not in the aligned region.

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