DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vav and pigs

DIOPT Version :9

Sequence 1:NP_001097030.1 Gene:Vav / 32920 FlyBaseID:FBgn0040068 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_001245550.1 Gene:pigs / 31596 FlyBaseID:FBgn0029881 Length:977 Species:Drosophila melanogaster


Alignment Length:408 Identity:77/408 - (18%)
Similarity:132/408 - (32%) Gaps:126/408 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 HNNFGIRDADLFEPTMLYDLTNFHRVLITLSKLSQCRKVQQLHPDLIGFNLQLSPTERSHSDEAI 164
            |:...|.||:                  :.::|.|.....|:.|       ...|.|::.:|...
  Fly   564 HSQASIEDAE------------------SNARLDQTSSDSQISP-------SDEPAEKATTDILE 603

  Fly   165 YKDLHSTDLNMRK--------TSSIDASASSSAEYYDRTSQSGSLDENSDITIE----------- 210
            .:||:..|....:        ..|:.|..|.:.:..|:..|||....:.:||::           
  Fly   604 EEDLNGQDREEDQEDYSVCDGPQSLPAILSGAHKLSDKFEQSGVFITDDEITVDIAKTEDQSVAN 668

  Fly   211 ---NGTEDIDDYIEDSLSNMCDSTIDNDAEDAGVETPLLSDC--QGSHVRELS---------FDL 261
               |.|.::.......|:.....:|||            |.|  .|..:::||         |..
  Fly   669 TMGNPTPNLSKIPRSPLAQRRRRSIDN------------STCGGAGGSLQDLSSRSGLPAPAFSR 721

  Fly   262 ALDVVSSTTDGASNAVTPTPESYARQSQS---PLAAAAPSVPVSAAPGPPMGRLVSTSSS----- 318
            ...|..|.....|...|.||.:..|..|:   |:.....:.......|.|..|...|:.:     
  Fly   722 KQPVYRSVRTRNSTGATTTPVAPPRSRQATQLPMVRDVTNTWSGRTTGAPKRRPPCTADTFVAPT 786

  Fly   319 ----------------SSSLLVSESQRLQRAAA----------AVYNYRSSMASTEHEYAYIYSE 357
                            ||.:|...:.|..|:.|          .|.|:.||..:.:...|...::
  Fly   787 NGTGPAGSFERNGKGRSSQILYDSNGRRVRSGAPGCTSSLTTSPVKNHASSPLAQQLLEAASSAK 851

  Fly   358 DDEKVYEDLCYVTFQAKAKPEVTTDNIACNGTGYD--HTNTKEEEVYQDL--------------- 405
            :|.::.|.:..:..:..|..: |...:....|..:  ::|.|:..||:|.               
  Fly   852 NDAQILEKMKSLLSRYAAGNQ-TKAGVGATATAANKINSNGKKTPVYEDFTTAWVHSNGNLERSE 915

  Fly   406 -C---ALHRTSRSQTASS 419
             |   |..|:.||..|||
  Fly   916 SCSPPAKARSKRSSAASS 933

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VavNP_001097030.1 CH 20..132 CDD:278723 4/31 (13%)
RhoGEF 428..603 CDD:279015
PH_Vav 624..753 CDD:269930
PH 641..749 CDD:278594
C1_1 761..804 CDD:278556
SH2_Vav_family 824..934 CDD:198193
SH3 940..993 CDD:302595
pigsNP_001245550.1 CH 22..159 CDD:237981
GAS2 258..325 CDD:280367
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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