DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vav and Plekhn1

DIOPT Version :10

Sequence 1:NP_001097030.1 Gene:Vav / 32920 FlyBaseID:FBgn0040068 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_001127995.1 Gene:Plekhn1 / 298694 RGDID:1311019 Length:615 Species:Rattus norvegicus


Alignment Length:226 Identity:50/226 - (22%)
Similarity:84/226 - (37%) Gaps:75/226 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 PTERSHSDEAIYKDL--------HSTDLNMRKT--SSIDASASSSAEYYDRTSQ---SGS----- 200
            ||.:|..:.::...:        :.|:.|...|  :.::...|.|:::....:|   |||     
  Rat   368 PTSQSLPEPSVPTTIGVPAHPVPNQTNSNCVSTGQTKVELRHSGSSQFPRGKAQREVSGSTAPLP 432

  Fly   201 ----LDENSDITIENGTEDIDDYIEDSLSNMCDSTIDNDAEDAGVETP------LLSDCQGSHVR 255
                |.:.|.:.:::|.|..|          |...|.:....|...||      .::|.||    
  Rat   433 LHLDLTKMSVLNLDSGPEAQD----------CSPDIPHSPLYADPYTPPAIAHHKITDIQG---- 483

  Fly   256 ELSFDLALDVVSSTTDGASNAVTPTPESYARQSQSPLAAAAPSVPVSAAPGPPMGRLVSTSSSSS 320
               .|..|..|.:         :|.||     ..||..:.:.|||||.:         ::..|||
  Rat   484 ---LDEFLCAVQT---------SPGPE-----LSSPFPSVSVSVPVSDS---------NSGISSS 522

  Fly   321 -----SLLVSESQRLQRAAAAVYNYRSSMAS 346
                 |.|:|:...||..|:  ..:|.|:.|
  Rat   523 PRPLGSHLLSKKGALQSRAS--QRHRGSIKS 551

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VavNP_001097030.1 CH_VAV 19..135 CDD:409050
RhoGEF 428..602 CDD:459876
PH_Vav 624..753 CDD:269930
C1_VAV 759..810 CDD:410360
SH2_Vav_family 824..934 CDD:198193
SH3 940..993 CDD:473055
Plekhn1NP_001127995.1 PH-like 96..188 CDD:473070
PH_PLEKHN1 222..341 CDD:270132
Blue background indicates that the domain is not in the aligned region.

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