DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vav and gef2

DIOPT Version :9

Sequence 1:NP_001097030.1 Gene:Vav / 32920 FlyBaseID:FBgn0040068 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_592928.1 Gene:gef2 / 2543168 PomBaseID:SPAC31A2.16 Length:1101 Species:Schizosaccharomyces pombe


Alignment Length:803 Identity:156/803 - (19%)
Similarity:284/803 - (35%) Gaps:264/803 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   331 QRAAAAVY--------------NYRSSMASTEHEYA-YIYSEDDEKVYEDLCYV----------- 369
            :.|||.||              |:|.|:  .|.||| ||:  |...|::.....           
pombe   105 KEAAACVYEFLCVESVCLHTGENWRESV--IEPEYASYIF--DTINVFQSSSLTRELYSLGEPNG 165

  Fly   370 --TFQAKAKPEVTTDNIACN--GTGYDHTNTKEEEVYQDLCALHRTSRSQTAS-STSF------- 422
              .|...|..::..||....  ...|..|.....|:::|       ||.:|:| |.||       
pombe   166 VREFVVDAIFDIKVDNSWWEDPSNSYWKTVIGSREMFED-------SRKKTSSPSPSFASSKDAG 223

  Fly   423 -----EQRDYVIRELIDTESNYLDVLTALKTKFMGPL-------ERHLNQDELRLIFPR-IRELV 474
                 :::..::.|:::|||.|::.|..|...:..||       ::.|...||..:||. :.:|:
pombe   224 TIPAIQKKKSLLIEMMETESTYVERLRHLVNDYALPLRDLAKSSKKLLGLYELNTLFPPCLNKLI 288

  Fly   475 DIHTKFLDKLRESLTPNA------KVKMAQVFLD----FREPFLIYGEFCSLLLGAIDYLADVCK 529
            .:::.|||:. |::..:.      :.|..::.|.    |...|..:.:.....|...:...:|.|
pombe   289 QLNSAFLDEF-EAIMSDLNFEDIDEKKFEEIDLRLACCFESHFFAFSQHYPRYLEQSNDFGNVLK 352

  Fly   530 KNQIIDQLVQ-----KCERDYNVGKLQLRDILSVPMQRILKYHLLLDKLV---KETSPLHDDYRS 586
            ....|.:.|:     |...:.|||   |..::..|:|||.:|.|.||:::   :|....|...||
pombe   353 MASKIPKFVEFHDQVKLNANMNVG---LSQLIMEPVQRIPRYSLFLDQIILLTQEGECQHTYVRS 414

  Fly   587 LERAKEAMIDVSQYINEVKRDSDHLVIIQKVKDSICDI--HLLQNG-NGSDLLQYGR-LLLDGEL 647
            :|..|.  |.....::..:|..    |...::..|.|:  :::.|. |..|.:...| .|.:|:|
pombe   415 VEIIKN--IAEMPTVDAEERSR----IFAGLQHIIPDLAPNMISNSRNFIDCIDVTREFLKNGQL 473

  Fly   648 HIKAHEDQKTKLRYAFVF--DKILIMVKALHIKTGDMQYTYRDSHNLA----DYRVEQSHSRRTI 706
            |:         :.|..:.  |:|.::.:             |...::|    |.|  :.:.|.:.
pombe   474 HL---------IPYTLILFNDRICLVQR-------------RSKSSIASTILDLR--KQNPRNSY 514

  Fly   707 GRDTRFKY---------QLLLARKSGKTAFTL--YLKS----------------EHER--DKWRK 742
            .::.|.:|         :|..:.....|.|.:  |..|                |:.|  |::.:
pombe   515 SKEKRAQYIGSNMNEAVELTRSMVEENTIFLISKYASSPSFFNEYPILKFRCDFENVRTMDRFYQ 579

  Fly   743 ALTEAME-SLEPPGCQS----------------TDHKMEIYTFDAPTTC-------RHCSKFLK- 782
            :..:|:. :...|.|.|                .:::.|....|....|       :|  |||: 
pombe   580 SFQKALSMNKSQPSCLSFSKLNDFVVFFNNYSRFEYEKESKRSDIVCICTNDANVDKH--KFLQD 642

  Fly   783 GRI-----------HQGY----------RCKVCQISVHKGCISSTGRCKQNPVSVPPPVCDRQLS 826
            |.|           |..:          ...:.:..:.:.|::.....|:..:.   |..:|..|
pombe   643 GNIVITFFQQDEDFHLSFDSWLGVSLPTEAVIAKEDLREACLNYLINIKRLLLC---PFSNRNFS 704

  Fly   827 EFNWFAGNMDRETAAHRLENR-------------RIGTYLLRVRPQGP-----STAHETMYALSL 873
            ..:.::..:....:|:....:             :|...|.|...||.     :|....||.|  
pombe   705 SLDLYSNLIQHLLSANSSPRKSRLSFGGRPGSPSKISLSLNRFYNQGGLSKSCATLPSQMYNL-- 767

  Fly   874 KTDDNVI--KHMKINQENSG------------------------DSMLYCLSSRRH------FKT 906
              |.|.|  |.:|.|..|:.                        .::||.||.:..      :..
pombe   768 --DHNNISQKSLKFNTHNTSKASAEKTVEHLEAFKGGFKYHTDLKNLLYPLSEKEKIEGDELYDN 830

  Fly   907 IV------ELVSYYERNDLGENF 923
            |:      ||:|:|..|.:...|
pombe   831 ILKETFNEELLSHYPPNIIYATF 853

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VavNP_001097030.1 CH 20..132 CDD:278723
RhoGEF 428..603 CDD:279015 48/200 (24%)
PH_Vav 624..753 CDD:269930 27/168 (16%)
PH 641..749 CDD:278594 23/142 (16%)
C1_1 761..804 CDD:278556 11/71 (15%)
SH2_Vav_family 824..934 CDD:198193 29/156 (19%)
SH3 940..993 CDD:302595
gef2NP_592928.1 RhoGEF 237..423 CDD:279015 48/191 (25%)
Nod1 824..967 CDD:293719 7/30 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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