DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vav and Spata13

DIOPT Version :9

Sequence 1:NP_001097030.1 Gene:Vav / 32920 FlyBaseID:FBgn0040068 Length:1001 Species:Drosophila melanogaster
Sequence 2:XP_036014454.1 Gene:Spata13 / 219140 MGIID:104838 Length:1295 Species:Mus musculus


Alignment Length:859 Identity:174/859 - (20%)
Similarity:291/859 - (33%) Gaps:304/859 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 SSIDASASSSAEYYDRTSQSG-------SLDENSDITIENGTEDI-----DDYIEDSLSNMCDST 231
            ||:...:.|||:..:||..:.       ||.:    |:.|...|:     |.|..::|...    
Mouse   504 SSLSVLSLSSADSEERTEDASHRQPGPVSLQD----TVLNAAGDVGGESGDSYFPENLDGA---- 560

  Fly   232 IDNDAEDAGVETPLLSD--CQGSHVRE--------------------------------LSFDLA 262
              ...|:...|..:..|  .|||.:.|                                .|..:.
Mouse   561 --THPEEKKEEVLVTEDDWPQGSALEEEQNEAPRISRRRWGSGRRTRPRPLSDYGQLAGRSLSIP 623

  Fly   263 LDVVSSTTDGASNAVTPTPESYARQSQSPLA---------------------------------- 293
            .|.:::......:.....|.|....||.|.|                                  
Mouse   624 EDAIAADPPDEDHVDRMHPASVTTTSQDPCAPSGSCRGGRRRRPISVIGGVSFYGNTQVEDVENL 688

  Fly   294 ----AAAPSVPVSAAP----------------GPPMG-------RLVSTSSSS------SSLLVS 325
                ||.|.||....|                ..|:|       |.:.||:.|      ||.||.
Mouse   689 LVQPAARPPVPAHQVPPYKAVSARLRPFTFSQSTPIGLDRVGRRRQMKTSNVSSDGGAESSALVD 753

  Fly   326 ESQRLQRAAAAVYNYRSSMASTEHEYAYIYSEDDEKVYEDLCYVTFQAKAKP------------- 377
            ::.                           ||:|.. ||:||      :|.|             
Mouse   754 DNG---------------------------SEEDFS-YEELC------QANPRYLQPGGEQLAIN 784

  Fly   378 EVTTD-NIACNGTGYDHTNTKEEE-------VYQDLCALHR------------------------ 410
            |:.:| ::.|....:||....::|       |.|.|.|.::                        
Mouse   785 ELISDGSVVCAEALWDHVTMDDQELGFKAGDVIQVLEASNKDWWWGRNEDKEAWFPASFVRLRVN 849

  Fly   411 -------------------TSRSQTASSTSFEQ-RDYVIRELIDTESNYLDVLTALKTKFMGPLE 455
                               ||:::.....|.:| |..||:|:::||..|:..|..:...::....
Mouse   850 QEELPENCSSSHGEEQDEDTSKARHKHPESQQQMRTNVIQEIMNTERVYIKHLKDICEGYIRQCR 914

  Fly   456 RHLNQ---DELRLIFPRIRELVDIHTKFLDKLRESLT---PNAKVKMAQVFLDFREPFLIYGEFC 514
            :|...   .:|..||..|.::.....|||..|.:...   |:.. ::...||:.:|.|.||.|:|
Mouse   915 KHTGMFTVAQLATIFGNIEDIYKFQRKFLKDLEKQYNKEEPHLS-EIGSCFLEHQEGFAIYSEYC 978

  Fly   515 SLLLGAIDYLADVCKKN---------QIIDQLVQKCERDYNVGKLQLRDILSVPMQRILKYHLLL 570
            :...||...|:::.|.:         :::.|::.          :.|...|..|:|:|.||.|.|
Mouse   979 NNHPGACVELSNLMKHSKYRHFFEACRLLQQMID----------IALDGFLLTPVQKICKYPLQL 1033

  Fly   571 DKLVKETSPLHDDYRSLERAKEAMIDVSQYINEVKRDSDHLVIIQKVKDSICDIHLLQNGNGSDL 635
            .:|:|.|:..|.||.:::.|.|||.:|:..|||.||..:.:..|.:.:.||.      ...|.|:
Mouse  1034 AELLKYTTQEHGDYNNIKAAYEAMKNVACLINERKRKLESIDKIARWQVSIV------GWEGLDI 1092

  Fly   636 L-QYGRLLLDGELHIKAHEDQKTKLRYAFVFDKILIMVKALHIKTGDMQYTYR---DSHNLADYR 696
            | :...|:..||| .|.....|::.|..|:||..|:..|...::...:.|..|   |...|.|  
Mouse  1093 LDRSSELIHSGEL-TKITRQGKSQQRIFFLFDHQLVSCKKDLLRRDMLYYKGRMDMDEVELVD-- 1154

  Fly   697 VEQSHSRRTIGRDTRFKYQLLLARKSGKTAFTLYLKS-----------EHERDKWRKALTEAMES 750
            ||.       |||..:...|       :.||.|..|:           :.::.:|.:|..:....
Mouse  1155 VED-------GRDKDWSLSL-------RNAFKLVSKATDEVHLFCARKQEDKARWLQAYADERRR 1205

  Fly   751 LEPP---GCQSTDHKMEIYTFDAPTTCRHCSKFLKGRIHQGYR-CKVCQISVHKGCISSTGRCKQ 811
            ::..   |.:..:::.::...:|.......||        ||. |.|.  ..|:    |.....|
Mouse  1206 VQEDQQMGMEIPENQKKLAMLNAQKAGHGKSK--------GYNSCPVA--PPHQ----SLPPLHQ 1256

  Fly   812 NPVSVPPPVCDRQL 825
            ..::||..:..:|:
Mouse  1257 RHITVPTSIPQQQV 1270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VavNP_001097030.1 CH 20..132 CDD:278723
RhoGEF 428..603 CDD:279015 51/189 (27%)
PH_Vav 624..753 CDD:269930 32/143 (22%)
PH 641..749 CDD:278594 29/121 (24%)
C1_1 761..804 CDD:278556 8/43 (19%)
SH2_Vav_family 824..934 CDD:198193 1/2 (50%)
SH3 940..993 CDD:302595
Spata13XP_036014454.1 PHA03247 <251..497 CDD:223021
SH3_ASEF 777..848 CDD:212906 10/70 (14%)
RhoGEF 887..1066 CDD:214619 51/189 (27%)
PH_Collybistin_ASEF 1071..1209 CDD:269931 35/160 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1291
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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