DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vav and Stac

DIOPT Version :9

Sequence 1:NP_001097030.1 Gene:Vav / 32920 FlyBaseID:FBgn0040068 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_058549.1 Gene:Stac / 20840 MGIID:1201400 Length:403 Species:Mus musculus


Alignment Length:273 Identity:59/273 - (21%)
Similarity:99/273 - (36%) Gaps:67/273 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   754 PGCQSTDHKMEIYTFDAPTTCRHCSKFLKG-RIHQGYRCKVCQISVHKGCISSTG--RCK----- 810
            ||..|..|..:.:.|..||.|..|:..:.| ....|.||..|::|:|..|.....  ||.     
Mouse   102 PGSNSKLHAFQEHVFKKPTFCDVCNHMIVGTHAKHGLRCGACKMSIHHKCADGLAPQRCMGKLPK 166

  Fly   811 ------QNPV----------SVPPPVCDRQLSEFNWFAGNMDRETAAHRLENRRIGTYLL-RVRP 858
                  .:|:          .|.|..|..::...               .|..|.||.|. |.:.
Mouse   167 GFRRYYSSPLLIHEQFGCIKEVMPIACGNKVDPV---------------YEALRFGTSLAQRTKK 216

  Fly   859 QGPSTAHETMYALSLKTDDNVIKHMKINQENSGDSMLYCLSSRRHFKTIVELVSYYERNDLGE-- 921
            .|..:..::    ..:|..:.:..:....:..||.        ...:|....|..|..|.:.:  
Mouse   217 GGSGSGSDS----PPRTSTSELVDVPEEADGPGDG--------SDMRTRSNSVFTYPENGMDDFR 269

  Fly   922 ------NFAG-LNQSLQWPYKEVIATALYDYEPKAGSNQLQLRTDCQVLVIGKDGDSKGWWRGKI 979
                  |..| |::.   |.:.....|||.:.|:. :..|::|....:.::  :..::.||:|||
Mouse   270 DQMKTTNHQGPLSKD---PLQMNTYVALYRFIPQE-NEDLEMRPGDMITLL--EDSNEDWWKGKI 328

  Fly   980 GDTVGYFPKEYVQ 992
            .|.||:||..:||
Mouse   329 QDRVGFFPANFVQ 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VavNP_001097030.1 CH 20..132 CDD:278723
RhoGEF 428..603 CDD:279015
PH_Vav 624..753 CDD:269930
PH 641..749 CDD:278594
C1_1 761..804 CDD:278556 14/43 (33%)
SH2_Vav_family 824..934 CDD:198193 17/119 (14%)
SH3 940..993 CDD:302595 18/53 (34%)
StacNP_058549.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..51
C1 109..160 CDD:237996 14/50 (28%)
STAC2_u1 167..>262 CDD:293269 17/121 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..264 8/63 (13%)
SH3_Stac_1 290..342 CDD:212767 18/55 (33%)
SH3 349..399 CDD:302595
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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