DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vav and Rasgrf2

DIOPT Version :9

Sequence 1:NP_001097030.1 Gene:Vav / 32920 FlyBaseID:FBgn0040068 Length:1001 Species:Drosophila melanogaster
Sequence 2:XP_036013814.1 Gene:Rasgrf2 / 19418 MGIID:109137 Length:1190 Species:Mus musculus


Alignment Length:564 Identity:124/564 - (21%)
Similarity:232/564 - (41%) Gaps:139/564 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   317 SSSSSLLVSESQRLQRAAAAVYNYRSSMASTE--------HEYAYIYSEDDEKVYEDLCYVTFQA 373
            :|.:.:|:.....:|:     |.:...:..||        |:.     ||.:...|.|       
Mouse   131 ASYADILIEREVLMQK-----YIHLVQIVETEKIATNQLRHQL-----EDQDTEIERL------- 178

  Fly   374 KAKPEVTTDNIACNGT-----GYDHTNTKEEE------------------------VYQD-LCAL 408
              |.|:    :|.|.|     .| |.:.:||:                        :.|| :|:.
Mouse   179 --KSEI----VALNKTKERMRPY-HVHQEEEDPDIKKIKKVQSFMRGWLCRRKWKTIVQDYICSP 236

  Fly   409 HRTSRSQTASSTSFEQRDYVIRELIDTESNYLDVLTALKTKFMGPL-------ERHLNQDELRLI 466
            |         :.|..:|:.::..:::.|:.|:..|..|...|:.||       :..:|.|::..|
Mouse   237 H---------AESMRKRNQIVFTMVEAETEYVHQLYILVNGFLRPLRMAASSKKPPINHDDVSSI 292

  Fly   467 FPRIRELVDIHTKFLDKLRESLTPNAKVKMAQVFLDFREPFL-IYGEFCSLLLGAIDYLADVCKK 530
            |.....::.:|..|...|:..|.....:.:|.:| |...|.| ||.||......::..||: ||:
Mouse   293 FLNSETIMFLHEIFHQGLKARLANWPTLVLADLF-DILLPMLNIYQEFVRNHQYSLQVLAN-CKQ 355

  Fly   531 NQIIDQLVQKCERDYNVGKLQLRDILSVPMQRILKYHLLLDKLVKETSPLHDDYRSLERAKEAMI 595
            |:..|:|:::.|.:.......|...|:.||.:|.:|.:.|.:|:..|...|.:.:|||.||..:.
Mouse   356 NRDFDKLLKQYEANPACEGRMLETFLTYPMFQIPRYIITLHELLAHTPHEHVERKSLEFAKSKLE 420

  Fly   596 DVSQYINEVKRDSDHL---VIIQKVKDSICDIHL------LQNGNGSDLLQY-----GRL--LLD 644
            ::|:.:::...|::::   :.|:::....|||.|      ::.|:   |:|.     |:|  :..
Mouse   421 ELSRVMHDEVSDTENIRKNLAIERMIVEGCDILLDTSQTFIRQGS---LIQVPSVERGKLSKVRL 482

  Fly   645 GELHIKAHEDQKTKLRYAFVFDK-ILIMVKA----LH-IKTGD----MQYTYRDSHNLADYRVEQ 699
            |.|.:|     |...|..|:|.| .||..::    || :|||.    :|.|..:..:.:|  .:.
Mouse   483 GSLSLK-----KEGERQCFLFTKHFLICTRSSGGKLHLLKTGGVLSLIQCTLIEEPDGSD--DDP 540

  Fly   700 SHSRRTIGRDTRFKYQLLLARKSGKTAFTLYL--KSEHERDKWRKALTEAMESLEPPGCQSTDHK 762
            ..|....|. ..||   ::.......:||:.|  .|..|:..|...:::.::::...|..:.   
Mouse   541 KGSGHMFGH-LDFK---IVVEPPDAASFTVVLLAPSRQEKAAWMSDISQCVDNIRCNGLMTI--- 598

  Fly   763 MEIYTFDAPTTCRHCSKFLKGRIHQG----------YRCKVCQI 796
              ::..::..|..|..| ...|:|:.          ..|||.||
Mouse   599 --VFEENSKVTVPHMIK-SDARLHKDDTDICFSKTLNSCKVPQI 639

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VavNP_001097030.1 CH 20..132 CDD:278723
RhoGEF 428..603 CDD:279015 48/182 (26%)
PH_Vav 624..753 CDD:269930 35/153 (23%)
PH 641..749 CDD:278594 29/121 (24%)
C1_1 761..804 CDD:278556 10/46 (22%)
SH2_Vav_family 824..934 CDD:198193
SH3 940..993 CDD:302595
Rasgrf2XP_036013814.1 PH_RasGRF1_2 19..158 CDD:270081 5/31 (16%)
RhoGEF 247..428 CDD:214619 48/182 (26%)
PH 480..588 CDD:214574 28/118 (24%)
RasGEF_N 638..>686 CDD:395493 2/2 (100%)
REM <853..925 CDD:413353
RasGEF 951..1187 CDD:214539
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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