DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vav and lrit2

DIOPT Version :9

Sequence 1:NP_001097030.1 Gene:Vav / 32920 FlyBaseID:FBgn0040068 Length:1001 Species:Drosophila melanogaster
Sequence 2:XP_002933949.1 Gene:lrit2 / 100497156 XenbaseID:XB-GENE-923281 Length:570 Species:Xenopus tropicalis


Alignment Length:456 Identity:83/456 - (18%)
Similarity:154/456 - (33%) Gaps:140/456 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   591 KEAMIDVSQYINEVKRDSDHLVIIQKVKDSICDIHLLQ----NGNGSDLLQYGRLLLDGELHIKA 651
            |:...|:...|.:::.::.||..:.  :.|...:|.|.    |.|...::|           :|:
 Frog    46 KKIPSDIPPDIRKIRIENCHLTELS--RGSFGSVHTLHYLWLNFNNITVMQ-----------MKS 97

  Fly   652 HEDQKTKLRYAFVFDKILIMVKALHIKTGDMQYT-YRDSHNLADYRVEQSHSRRTIGRDTRFKY- 714
            .||.|:           |..::....|...:.:| ::|:.||.  .::..|:|..:..:...|: 
 Frog    98 LEDVKS-----------LTELRLQGNKLRSIPWTAFQDTPNLK--ILDLKHNRLDVLPEHALKFL 149

  Fly   715 -----------QLLLARKSGKTAFTLYLKSEHERDKWRKALTEAMESLEPPGCQSTDHKMEIYTF 768
                       ||.:..|.....:.||.|: |..|:....|:.|:.:|.                
 Frog   150 ANLTYLDLSFNQLTVISKDVFANWPLYQKA-HRSDRREDVLSNAVLALH---------------- 197

  Fly   769 DAPTTCRHCSKFLKGRIHQGYRCKVCQISVHKGCISSTGRCKQNPVSVPPPV--------CDRQL 825
            :.|.||.                  |::   ||.:       |...:|.||:        |....
 Frog   198 ENPWTCD------------------CRL---KGFV-------QFVKAVSPPIILMNSYLTCISPN 234

  Fly   826 SEFNWFAGNMDRETAAHRLENRRIGTYLLRVR---------PQGPSTAHETMYALSLKTDDNVIK 881
            |:...|...:|.::....|.:..:....::|.         ...|..:....|.|.:....|| .
 Frog   235 SKAGKFFHEIDLKSCLKPLVSTPLSNLTIQVGLNATLSCFVKASPMPSIWWTYGLKVVKAFNV-S 298

  Fly   882 HMKINQE-----------NSGDSMLY-CLSSRRHFKTIVELVSYYERNDLGENFAGLNQSLQWPY 934
            ...||:|           :..|:.:| |:::.....:...::...:.|.||.....|:.||    
 Frog   299 TTTINEETIKSELIIPAVHVTDAGIYKCIATNFLGNSSASILLNVQSNKLGNASPSLSYSL---- 359

  Fly   935 KEVIATALYDYEPKAGSNQLQLRTDCQVLVIGKDGDSKGWWR-----GKIGDTVGYFPKEYVQEQ 994
                       .|.:.|:|..:..|.::......|.|..|:.     |:...|: ||.| |...|
 Frog   360 -----------PPSSSSSQEHVFIDLRISKQTAYGISLEWFAVTENPGETWYTI-YFGK-YEDTQ 411

  Fly   995 K 995
            |
 Frog   412 K 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VavNP_001097030.1 CH 20..132 CDD:278723
RhoGEF 428..603 CDD:279015 3/11 (27%)
PH_Vav 624..753 CDD:269930 29/145 (20%)
PH 641..749 CDD:278594 23/120 (19%)
C1_1 761..804 CDD:278556 6/42 (14%)
SH2_Vav_family 824..934 CDD:198193 22/130 (17%)
SH3 940..993 CDD:302595 13/57 (23%)
lrit2XP_002933949.1 leucine-rich repeat 56..79 CDD:275378 4/24 (17%)
LRR_8 57..114 CDD:338972 13/80 (16%)
leucine-rich repeat 80..103 CDD:275378 7/33 (21%)
LRR_8 103..162 CDD:338972 9/71 (13%)
leucine-rich repeat 104..127 CDD:275378 4/22 (18%)
leucine-rich repeat 128..151 CDD:275378 4/24 (17%)
leucine-rich repeat 152..165 CDD:275378 2/12 (17%)
leucine-rich repeat 176..203 CDD:275378 8/43 (19%)
TPKR_C2 199..249 CDD:387596 14/77 (18%)
IG_like 259..343 CDD:214653 12/84 (14%)
fn3 373..444 CDD:365830 12/42 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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