DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vav and cit

DIOPT Version :9

Sequence 1:NP_001097030.1 Gene:Vav / 32920 FlyBaseID:FBgn0040068 Length:1001 Species:Drosophila melanogaster
Sequence 2:XP_031751702.1 Gene:cit / 100145758 XenbaseID:XB-GENE-981097 Length:2078 Species:Xenopus tropicalis


Alignment Length:1009 Identity:183/1009 - (18%)
Similarity:329/1009 - (32%) Gaps:295/1009 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 LVIHLDPSS--LDPREFNRKPQMAQFLCSK------NIKLFLDVCHNNFGIRDADLFEPTMLYDL 119
            |.:||..:.  .:.:..|.:.||.:.|..|      .||...::|..|..:.:.......:...:
 Frog   755 LEVHLKQNEQVYEEKARNIETQMKKDLADKEALELSRIKNEEEICEKNRILSEQKAMINALESKI 819

  Fly   120 TNFHRVLITLSKLSQCRKVQQLHPDLIGFNLQLSPTERSHSDEAIYKDLHSTDLNMR-KTSSIDA 183
            |:..:   .|::||:..|        :..|..|.......:.|.:..:|......:. :...|:|
 Frog   820 TSLEQ---RLAELSEANK--------LAANSSLFTQRNMKAQEEMISELRQQKFYLETQAGKIEA 873

  Fly   184 SASSSAEYYDRTSQSGSLDENSDITIENGTEDIDDYIEDSLSNMCDSTIDNDAEDAGVETPLLSD 248
            ......|..:|.:.....|:|..:.:|....:|              :::::.:...::..|...
 Frog   874 QNQKLEEQLERINNQDHTDKNRLLELETRLREI--------------SLEHEEQKLELKRQLTEV 924

  Fly   249 CQGSHVRELSFDLALDVVSSTTDGASNAVTPTPESYARQSQSPL----AAAAPSVPVSAAPGPPM 309
            ......||...        |:...|.:|:    ||...|:::.|    |.|...:.|..:....:
 Frog   925 QLTLQERETQI--------SSLQSARSAL----ESQLHQAKTELEDTTAEAEEEIQVLRSHRDEI 977

  Fly   310 GRLVSTSSSSSSLLVSESQRLQRAAAAVYNYRSSMASTEHEYAYIYSEDDEKVYEDLCYVTFQAK 374
            .|...|...|.::|.....:|.|.:       ...|...::..|:                  :|
 Frog   978 QRKFDTLRDSCTVLTELEDQLNRIS-------QENADLNNQNFYL------------------SK 1017

  Fly   375 AKPEVT--TDNIACNGTGYDHTNTKEEEVYQDLCALHRTSRSQTASSTSFEQR----DYVIRELI 433
            ...||:  ||.|....:..||...:..|....|.:..:|..:...:.|..|::    :.:..||:
 Frog  1018 QLSEVSGATDEIVQLRSEVDHLRREITEREMQLTSQKQTMEALKTTCTMLEEQVLDLEALNDELL 1082

  Fly   434 DTESNYLDVLTALKTKFMGPLERHLNQDELRLIFPRIRELVDIHTKFLDKLRESLTPNAKVKMAQ 498
            :.|..:        ..:...||....|.|.||     ||:    .:.||..::|     :|:..|
 Frog  1083 EKERQW--------ESWRSSLEDEKTQFECRL-----REV----QRLLDTEKQS-----RVRSDQ 1125

  Fly   499 VFLDFREPFLIYGEFCSLLLGAIDYLADVCKKNQII-DQLVQKCERDYNVGKLQLRDILSVPMQR 562
            ...:.|:         .:.|.|.::.|::....|.: ||            ||:...:...| .|
 Frog  1126 RTTESRQ---------MVELAAKEHKAEILALQQALKDQ------------KLKTESLSDKP-AR 1168

  Fly   563 ILKYHLLLDKLVKETSPLHDDYRSLERAKEAMIDVSQYINEVKRDSDHLVIIQKVKDSICDIHLL 627
            ||..   |:.|.|:.:.|..:.|||::..|...::.|.:.|.:......:.:||       .|:.
 Frog  1169 ILNQ---LNDLEKKHAMLEMNARSLQQKLETERELKQRLLEEQAKLQQQMDLQK-------NHIF 1223

  Fly   628 QNGNG-------SDLLQYGRLLLDGELH----IKAHE--------DQKTKLRYAFVFDKILIMVK 673
            :...|       :|||:..|..|:.:|.    :.:||        .|:|||            :.
 Frog  1224 RLTQGLQEALDRADLLKTERSDLEYQLENMQALFSHEKVKMEGTISQQTKL------------ID 1276

  Fly   674 ALHIKTGDMQYTYRDSHNLADYRVEQSHSRRTIGRDTRFKYQLLLARKSGKTAFTLYLKSEHERD 738
            .|..|........:..:.|...|.::.:....:..... :.::.|.::..:||     :.|....
 Frog  1277 FLQAKMDQPSKKKKVQNGLFSRRRDEPNQTSQVPLQYN-ELKVALEKEKARTA-----ELEEALQ 1335

  Fly   739 KWRKALTEAMESL-----------EPPG-----------CQSTDHKMEIYTFDAPTTCR------ 775
            |.|..|..|.|..           ..||           .:|.:|:....:..||...|      
 Frog  1336 KTRIELRSAREEAAHLKVSDHPVPSTPGTARQQIIMSALVRSPEHQPNAVSLLAPQNSRRKESSA 1400

  Fly   776 --HCSKFLKGRIH-------------QGYRCKVCQISVHKG-----CISSTGRCKQNPVSVPPPV 820
              ..|:.||.|:|             :..:|.||..:||.|     |:.....|.....|..|..
 Frog  1401 PEEFSRRLKERMHHNIPHRFNVALTMRAAKCSVCLDTVHFGRQGAKCLECQVMCHPKCSSCLPAT 1465

  Fly   821 CDRQLSEFNWFAGNMDRETAAHRLENRRIGTYLLRVRPQGPSTAHETMYALSLKTDDNVIK---H 882
            |            .:..|.|:|..|      ...|.:...|        .:..|..:.|::   .
 Frog  1466 C------------GLPAEYASHFTE------AFCREKMNSP--------GMQTKEANGVVRLEGW 1504

  Fly   883 MKINQENSGDSMLYCLSSRRHFKTIVELVSYYERNDLGENFAGLNQSLQWPYKEVI----ATALY 943
            |||.:.|                         :|...|           |..|.|:    ...:|
 Frog  1505 MKIPRNN-------------------------KRGQQG-----------WDRKYVVLEGSKVLIY 1533

  Fly   944 DYEPKAG----SNQLQL-RTDCQVLVIGKDGDSK 972
            |.|.|.|    |.:.:| ..|..|.|.|..|.::
 Frog  1534 DTELKEGGQRPSEEFELCLPDGDVTVHGAVGSTE 1567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VavNP_001097030.1 CH 20..132 CDD:278723 14/76 (18%)
RhoGEF 428..603 CDD:279015 38/175 (22%)
PH_Vav 624..753 CDD:269930 27/158 (17%)
PH 641..749 CDD:278594 20/119 (17%)
C1_1 761..804 CDD:278556 16/68 (24%)
SH2_Vav_family 824..934 CDD:198193 15/112 (13%)
SH3 940..993 CDD:302595 12/38 (32%)
citXP_031751702.1 STKc_CRIK 97..424 CDD:270752
Smc 450..1179 CDD:224117 94/532 (18%)
EnvC 1123..>1349 CDD:227278 53/275 (19%)
CRIK 1414..1469 CDD:410364 11/66 (17%)
PH 1499..1618 CDD:214574 21/105 (20%)
CNH 1648..1944 CDD:413319
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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