DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vav and arhgef7

DIOPT Version :9

Sequence 1:NP_001097030.1 Gene:Vav / 32920 FlyBaseID:FBgn0040068 Length:1001 Species:Drosophila melanogaster
Sequence 2:XP_012813343.1 Gene:arhgef7 / 100145259 XenbaseID:XB-GENE-962606 Length:861 Species:Xenopus tropicalis


Alignment Length:1044 Identity:196/1044 - (18%)
Similarity:346/1044 - (33%) Gaps:324/1044 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 ECVAWLTRCKVI-PPDHKAAQPDAEIRILAMTLRDGVLLCNLVIHLDPSSLD-----PREFNRKP 81
            :.|.||....|: .|....:.|:.   .|..:|:|||:||.|:..|.|.|:|     ||....  
 Frog     6 QTVTWLITLGVLESPKKTISDPEG---FLQTSLKDGVVLCRLLERLLPGSIDKVYPEPRTDTE-- 65

  Fly    82 QMAQFLCSKNIKLFLDVCHNNFGIRDADLFEPTMLYDLTNFHRVLITLSKLSQCRKVQQLHPDLI 146
                  |..||:.||..| :.|.:   :.|:...||...||::||.:|..|::.           
 Frog    66 ------CLGNIREFLRGC-SAFNL---ETFDANDLYQGQNFNKVLNSLVLLNKV----------- 109

  Fly   147 GFNLQLSPTERSHSDEAIYKDLHSTDLNMRKTSSIDASASSSAEYYDRTSQSGSLDENSDITIEN 211
                                   :.|:.:...|....|:|...:.:|.......|..:|.: :::
 Frog   110 -----------------------TADIGLGSDSVCARSSSHRIKSFDSLGSQSVLSRSSKL-LQS 150

  Fly   212 GTEDIDDYIEDSLSNMCDSTIDNDAEDAGVETPLLSDCQGSHVRELSFDLALDVVSSTT------ 270
            ....: |..|:|..:|......|              .|.::..||||:.. |::..|.      
 Frog   151 QYRSL-DMTENSNHHMVVRAKFN--------------FQQTNEDELSFNKG-DLIHVTRLEEGGW 199

  Fly   271 -DGASNAVTP-TPESYARQSQSPLAAAAPSVPVSAA-PGPPMGRLVSTSSSSSSLLVSESQRLQR 332
             :|..:..|. .|.:|.|:.:|   :..|..|.|.. ..||.|  ..||:.:.|           
 Frog   200 WEGTHSGKTGWFPSNYVREVKS---SEKPVSPKSTTLKSPPKG--FDTSAINKS----------- 248

  Fly   333 AAAAVYN-YRSSMASTEHEYAYIYSEDDEKVYEDLCYVTFQAKAKPEVTTDNIACNGTGYDHTNT 396
                .|| ...::..||.||:                                            
 Frog   249 ----YYNVVLQNILDTEGEYS-------------------------------------------- 265

  Fly   397 KEEEVYQDLCALHRTSRSQTASSTSFEQRDYVIRELIDTESNYLDVLTALKTKFMGPLERHLNQD 461
                                             :||.|..||||               |||...
 Frog   266 ---------------------------------KELQDILSNYL---------------RHLQTS 282

  Fly   462 E------LRLIFPRIRELVDIHTKFLDKLRE-SLTPNAKVKMAQVFLDFREPF-LIYGEFCSLLL 518
            |      :..:...:.|:.......:..|.| :..|..:.::...|:...... .:|..:|:...
 Frog   283 EKLSPTNISYLLGNLEEICAFQQILVQSLEECTKLPEGQQRVGGCFMSLMPQMKSLYIAYCANHP 347

  Fly   519 GAIDYLADVCKKNQIIDQLVQKCERD--YNVGKLQLRDILSVPMQRILKYHLLLDKLVKETSPLH 581
            .|::.|      .|..::|.:..|..  .:.|.|.|...||.|..|:.||..||.:|.:.....|
 Frog   348 SAVNVL------TQHSEELGEFMEMKGANSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYH 406

  Fly   582 DDYRSLERAKEAMIDVSQYINEV-KRDSDHLVIIQKVKDSICDIHLLQNGNGSDLLQYGRLLLDG 645
            .|...::::..|..::|....|| ||....|.|:.:.         ::...|.|:...|.::...
 Frog   407 PDRPDIQKSMTAFKNLSAQCQEVRKRKELELQILTET---------IRGWEGEDIKTLGTVIYMS 462

  Fly   646 ELHIKAHEDQKTKLRYAFVFDKILIMVKALHIKTGDMQYTYRDSHNLADY---RVEQSHSRRTIG 707
            ::.|:....::...||..:|..:|:|:.|....:|   :.|:....|...   ::|.:.:.:.  
 Frog   463 QVMIQCAGSEEKNERYLLLFPNVLLMLSASPRMSG---FIYQGKIPLTGMCVTKLEDNENHKN-- 522

  Fly   708 RDTRFKYQLLLARKSGKTAFTLYLKSEHERDKWRKALTEAMESLEPPGCQSTDHKMEIYT-FDAP 771
                 .|::     :|.....:.:...:::|     |.|.::.|         ||...|| ...|
 Frog   523 -----AYEI-----AGNMIERIIVSCNNQQD-----LQEWVDYL---------HKQTKYTSLINP 563

  Fly   772 TTCRH---CSKFLKGRIHQGYR---CKVCQIS---------VHKGCISST-GRCKQNPVSVPPP- 819
            |...|   |.......:....:   ||:..::         .|.|...|| ......|...|.| 
 Frog   564 TIKPHSVPCHTLPSHPVTPSSKHSDCKLMPLTPAYHTLPHLSHHGTPHSTISWSPLEPPKTPKPW 628

  Fly   820 --VCDRQLSEFNWFAGNMDRETAAHRLENRRIGTYLLRVRPQGPSTAHETMYAL-----SLKTDD 877
              .|.|........|....:|..:.  ..:.:...|.:.:|:...:..|  :||     :|:.|.
 Frog   629 SLSCLRPAPPLRPSAALCYKEDLSK--SPKTMKKLLPKRKPERKPSDEE--FALRKSTAALEEDA 689

  Fly   878 NVIKHMKINQENSGDSMLYCLSSRRHFKTIVELVSYYERNDLGENFAGLNQSLQWPYKEVIATAL 942
            .::|.::          .||.|:    ||...|.|.::..||..|             .|:|.  
 Frog   690 QILKVIE----------AYCTSA----KTRQTLNSTWQGTDLMHN-------------HVLAD-- 725

  Fly   943 YDYEPKAGSNQLQLRTDCQVLV---IGKDGDSKGWWRG---KIGDT----VGYFPKEYV-QEQKL 996
               :.::..:.|..|:....|.   :.:|.|....|..   ::|.|    .|..|:..: :|:|:
 Frog   726 ---DDQSSLDSLGRRSSLSRLEPSDLSEDSDYDSIWTAHSYRMGSTSRCRKGSTPQVLLPEEEKI 787

  Fly   997 ASEE 1000
            ..||
 Frog   788 IVEE 791

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VavNP_001097030.1 CH 20..132 CDD:278723 35/114 (31%)
RhoGEF 428..603 CDD:279015 39/184 (21%)
PH_Vav 624..753 CDD:269930 20/131 (15%)
PH 641..749 CDD:278594 16/110 (15%)
C1_1 761..804 CDD:278556 12/58 (21%)
SH2_Vav_family 824..934 CDD:198193 20/114 (18%)
SH3 940..993 CDD:302595 10/63 (16%)
arhgef7XP_012813343.1 CH 21..100 CDD:237981 27/93 (29%)
RhoGEF67_u1 116..162 CDD:293221 8/47 (17%)
SH3_betaPIX 166..219 CDD:212994 13/67 (19%)
RhoGEF 250..427 CDD:238091 45/274 (16%)
PH_Cool_Pix 458..556 CDD:269932 19/126 (15%)
PH 476..556 CDD:278594 18/108 (17%)
RhoGEF67_u2 615..710 CDD:293220 21/112 (19%)
betaPIX_CC 772..858 CDD:293131 6/20 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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