DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Muc18B and gpatch3

DIOPT Version :9

Sequence 1:NP_001285431.1 Gene:Muc18B / 32913 FlyBaseID:FBgn0031000 Length:308 Species:Drosophila melanogaster
Sequence 2:XP_005158511.1 Gene:gpatch3 / 791148 ZFINID:ZDB-GENE-070112-902 Length:688 Species:Danio rerio


Alignment Length:197 Identity:48/197 - (24%)
Similarity:77/197 - (39%) Gaps:35/197 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 AFEARDDSNIENPTIPPSNLDESTTEKPATEAPGTTEKVTTAAPGTTEKVTTEAPGTTEKITTEA 141
            |.:|:.|:    |||..:..|..||.:...:.|.|:.|:......:..|..|  |.|::|:..  
Zfish   263 ASQAKQDT----PTISLTIQDTPTTTQTNQDTPSTSCKIQDTPTASQRKQDT--PTTSQKLDM-- 319

  Fly   142 PGTTEKITTEAPGTTEKITTEAPGTTEKITTEAPGTTEKPATDAPGTTEK--------PATDAPG 198
             .||.....:.| |..:...:.| ||..|..:.| ||.:...|.|.|::|        ...|.|.
Zfish   320 -STTSCKIQDTP-TASQRKQDTP-TTSCIIQDTP-TTSQTVQDTPTTSQKQDMSTTSCKIQDTPT 380

  Fly   199 TTEKSET-------TDAPGTTDKSDT--------DAPITDEPSTAETSTDEPNTETTESGEETTI 248
            .:::.:|       .|.|..:.:.||        |.|.|.:.....|.|.....:.|.:..:|..
Zfish   381 ASQRKDTPPTSCIIQDTPTASQRKDTPPTSCIIQDTPTTSQTKRLNTPTASRKIQDTPTYTQTLY 445

  Fly   249 ED 250
            ||
Zfish   446 ED 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Muc18BNP_001285431.1 CBM_14 26..72 CDD:279884
MCLC <77..177 CDD:283562 26/99 (26%)
gpatch3XP_005158511.1 RRM_SF 12..>31 CDD:302621
G_patch 585..631 CDD:197727
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1181
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.