DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mur18B and cpg-2

DIOPT Version :10

Sequence 1:NP_573364.1 Gene:Mur18B / 32912 FlyBaseID:FBgn0030999 Length:481 Species:Drosophila melanogaster
Sequence 2:NP_498551.3 Gene:cpg-2 / 175991 WormBaseID:WBGene00015102 Length:524 Species:Caenorhabditis elegans


Alignment Length:349 Identity:79/349 - (22%)
Similarity:115/349 - (32%) Gaps:100/349 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 GNEETTVSEEETSTDASGDVETTTAAPETSPADQESSSAPEETTSAPEETTSAPEETTSAPEESS 169
            |.|.:..|..|||.:.||:.....:...:..|..|.|.                   .::.|.|.
 Worm    75 GCEGSGESSGETSGEGSGESSGEASGEGSGEASGEGSG-------------------EASGEGSG 120

  Fly   170 SAPEESSSAPEETTSAPEESSSAPEESSSAPE------ETTSAPEESSSAP---DQTS------S 219
            .|..|.|.:.|||.....|:......||....      .|.:|...|...|   |..|      |
 Worm   121 EASGEGSGSGEETVENVCENLEDGAYSSGGCTTYYFFCTTNTARFLSCPTPLFYDADSQKCIWKS 185

  Fly   220 APNESSAPPEETSSAPEQTSSAPEETS---SAPAEPESSSTSSAASPSTPAGTTIAPTPPTFKCQ 281
            ...|.......|..:.|.:.....|.|   |.....|:|..||.......:|.......||.:.:
 Worm   186 LVEECKEDLTITDGSGETSGEGSGEASGEASGEGSGEASGESSGQGSGEASGEGSGELEPTCEGK 250

  Fly   282 TAGLFPHISGDCS-RYHNCLLNPVLRQLQDIELTCPELTVFSPSLGRC--VRDLAECQVESFPCL 343
            ..|:.|  :|.|| .:..|  :..:.::.|    ||...||:|::..|  .||:|||        
 Worm   251 ADGIHP--NGVCSTNFLTC--SGGIARIMD----CPASLVFNPTILVCDWPRDVAEC-------- 299

  Fly   344 SVGRFAGI-------DETYYYS--------------------CVASLQGGFHKFIVRCSSGQRFE 381
                 ||:       :|..|:|                    |.|.|:  |.:..|||.    :|
 Worm   300 -----AGLPTPQPTCEEDGYFSFGQCSSSFTACTNGRAIVMFCPAGLK--FSESTVRCD----YE 353

  Fly   382 PLIGGCWRYDWTQIVPGQEATEIS 405
            ..:..|      |...|:|:.|.|
 Worm   354 SNVSEC------QETSGEESGEAS 371

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Mur18BNP_573364.1 PTZ00436 <120..249 CDD:185616 29/146 (20%)
ChtBD2 278..329 CDD:214696 13/53 (25%)