DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP1D3csd and HP1e

DIOPT Version :10

Sequence 1:NP_573358.1 Gene:HP1D3csd / 32906 FlyBaseID:FBgn0030994 Length:179 Species:Drosophila melanogaster
Sequence 2:NP_649878.1 Gene:HP1e / 41108 FlyBaseID:FBgn0037675 Length:174 Species:Drosophila melanogaster


Alignment Length:93 Identity:23/93 - (24%)
Similarity:36/93 - (38%) Gaps:25/93 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 DATNGGSVSGNLDGGNSNESQPLNVPPTDALLVRGKAIENVM-YSYMLGDTVYFIVTW-----KG 148
            ||..|.:||      |.:|:.      ||........:|.:: ..:.:|...| :|.|     :.
  Fly     4 DADGGETVS------NFSENS------TDFEETEEYIVERILDRRHYMGQLQY-LVKWLDYSDED 55

  Fly   149 SKWGEAVPVQEIKHVHPKLLIDYIKSLK 176
            :.|..|..:.    .|.  |||.|:|.|
  Fly    56 NTWESAADLD----CHS--LIDSIESQK 77

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1D3csdNP_573358.1 None
HP1eNP_649878.1 CD_CSD 27..71 CDD:349274 9/50 (18%)
CSD_HP1e_insect 111..163 CDD:349337
Blue background indicates that the domain is not in the aligned region.

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