DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP1D3csd and cbx5

DIOPT Version :10

Sequence 1:NP_573358.1 Gene:HP1D3csd / 32906 FlyBaseID:FBgn0030994 Length:179 Species:Drosophila melanogaster
Sequence 2:NP_988907.2 Gene:cbx5 / 394502 XenbaseID:XB-GENE-972727 Length:200 Species:Xenopus tropicalis


Alignment Length:195 Identity:34/195 - (17%)
Similarity:74/195 - (37%) Gaps:61/195 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PNNKNTGGFPAEEEKQKENDQQKENDQQKENDQQEEVQEE---------------PTKDESKEAG 57
            ||.:.|.|        |:|  ::.:|....::::|.|.|:               ..|..|:|..
 Frog    12 PNREGTMG--------KKN--KRASDASSSSEEEEYVVEKVLDRRVVKGQVEFLLKWKGFSEEHN 66

  Fly    58 STPPPKHMGVHNSARAELARLLVELLVQ---------QAELDATNGGSVSGNLDGGNSNESQPLN 113
            :..|.:::        :...|:.|.:.:         :|:.::|...:.|.::......||..  
 Frog    67 TWEPDRNL--------DCPELISEFMKKYKKVKETDPKAKTESTKRKAGSDDIKAKKRRESND-- 121

  Fly   114 VPPTDALLVRG--KAIENVMYSYMLGDT-----VYFIVTWKGSKWGEAVPVQEIKHVHPKLLIDY 171
                   :.||  :.:|.   ..::|.|     :.|::.||.|...:.|..:|.....|:::|.:
 Frog   122 -------IARGFERGLEP---EKIIGATDSCGELMFLMKWKDSDEADLVLAKEANVKCPQIVIAF 176

  Fly   172  171
             Frog   177  176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1D3csdNP_573358.1 None
cbx5NP_988907.2 CD_HP1alpha_Cbx5 37..85 CDD:349298 8/55 (15%)
CSD_HP1alpha_Cbx5 125..182 CDD:349302 12/55 (22%)

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