Protein Alignment HP1D3csd and Cbx1

DIOPT Version :10

• Sequence 1: NP_573358.1
• Gene: HP1D3csd / 32906
• FlyBaseID: FBgn0030994
• Length: 179
• Species: Drosophila melanogaster
• Sequence 2: XP_006247295.1
• Gene: Cbx1 / 360609
• RGDID: 1310714
• Length: 193
• Species: Rattus norvegicus
• Alignment Length: 179
• Identity: 35/179 - (19%)
• Similarity: 68/179 - (37%)
• Gaps: 40/179 - (22%)

  Fly    23 QKENDQQKENDQQKENDQQEEVQEE---------------PTKDESKEAGSTPPPKHMGVHNSAR 72
            :|:|  :|:.::..|.:::|.|.|:               ..|..|.|..:..|.:::
  Rat     3 KKQN--KKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL------- 58

  Fly    73 AELARLLVELLVQQA---ELDATNGGSVSGNLDGGNSNESQPLNVPPTDAL------------LV 122
             :...|:.|.|..|.   |.|.::||....:.|..:..|.........:||            ..
  Rat    59 -DCPDLIAEFLQSQKTAHETDKSDGGKRKADSDSEDKGEESKPKKKKEEALPIWFLQSEKPRGFA 122

  Fly   123 RGKAIENVMYSYMLGDTVYFIVTWKGSKWGEAVPVQEIKHVHPKLLIDY 171
            ||...|.::.:......:.|::.||.|...:.||.:|.....|:::|.:
  Rat   123 RGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISF 171

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HP1D3csd	NP_573358.1	None
Cbx1	XP_006247295.1	CD_HP1beta_Cbx1	20..69	CDD:349297	9/56 (16%)
		CSD_HP1beta_Cbx1	120..177	CDD:349301	12/52 (23%)