DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP1D3csd and cbx1a

DIOPT Version :10

Sequence 1:NP_573358.1 Gene:HP1D3csd / 32906 FlyBaseID:FBgn0030994 Length:179 Species:Drosophila melanogaster
Sequence 2:NP_956040.2 Gene:cbx1a / 326746 ZFINID:ZDB-GENE-030131-4945 Length:212 Species:Danio rerio


Alignment Length:189 Identity:35/189 - (18%)
Similarity:66/189 - (34%) Gaps:37/189 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KENSPNNKNTGGFPAEEEKQKENDQQKENDQQKENDQQEEVQEEPTKDE---------------- 52
            :|.||::|.......::.|:|..|..:|        ::||...|...|.                
Zfish    18 EEVSPDSKLAATAGKKQTKKKVEDVVEE--------EEEEYVVEKVLDRRVVKGRVEYLLKWKGF 74

  Fly    53 SKEAGSTPPPKHMGVHNSARAELARLLVELLVQQAELDATNGGSV---SGNLDGGNSNESQPLNV 114
            |:|..:..|..::        :...|:.|.:.:....|.....|.   ..:.|||..:.......
Zfish    75 SEEDNTWEPEDNL--------DCPDLIAEYMTKHKINDDKKESSAKRKESDTDGGGEDSRPKKRK 131

  Fly   115 PPTDAL--LVRGKAIENVMYSYMLGDTVYFIVTWKGSKWGEAVPVQEIKHVHPKLLIDY 171
            ...|..  ..||...|.::.:......:.|::.||.|...:.||.:|.....|:::|.:
Zfish   132 DEQDKPRGFARGLDPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISF 190

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1D3csdNP_573358.1 None
cbx1aNP_956040.2 CD_CSD 56..98 CDD:475127 6/49 (12%)
CSD_HP1beta_Cbx1 139..196 CDD:349301 12/52 (23%)

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