Protein Alignment HP1D3csd and Cbx3

DIOPT Version :10

• Sequence 1: NP_573358.1
• Gene: HP1D3csd / 32906
• FlyBaseID: FBgn0030994
• Length: 179
• Species: Drosophila melanogaster
• Sequence 2: NP_001008314.2
• Gene: Cbx3 / 297093
• RGDID: 1549705
• Length: 183
• Species: Rattus norvegicus
• Alignment Length: 178
• Identity: 34/178 - (19%)
• Similarity: 61/178 - (34%)
• Gaps: 28/178 - (15%)

  Fly     9 NNKNTGGFPAEEEKQKENDQQKENDQQKENDQQEEVQEEPTKDES---------------KEAGS 58
            :||.|        .||...:|....::.|..:.||...|...|..               .:|.:
  Rat     3 SNKTT--------LQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN 59

  Fly    59 TPPPKHMGVHNSARAELARLLVELLVQQAELDATNGGSVSGNLDGGNSNESQPLNVPPTDALLVR 123
            |..|:    .|....||....:.......|.|.|...|:|.: :..:|...:..:.........|
  Rat    60 TWEPE----ENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDS-ESDDSKSKKKRDAADKPRGFAR 119

  Fly   124 GKAIENVMYSYMLGDTVYFIVTWKGSKWGEAVPVQEIKHVHPKLLIDY 171
            |...|.::.:......:.|::.||.|...:.|..:|.....|:::|.:
  Rat   120 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAF 167

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HP1D3csd	NP_573358.1	None
Cbx3	NP_001008314.2	CD_HP1gamma_Cbx3	29..78	CDD:349299	9/52 (17%)
		CSD_HP1gamma_Cbx3	116..173	CDD:349303	11/52 (21%)