DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP1D3csd and cec-3

DIOPT Version :10

Sequence 1:NP_573358.1 Gene:HP1D3csd / 32906 FlyBaseID:FBgn0030994 Length:179 Species:Drosophila melanogaster
Sequence 2:NP_495652.1 Gene:cec-3 / 174265 WormBaseID:WBGene00011636 Length:339 Species:Caenorhabditis elegans


Alignment Length:134 Identity:26/134 - (19%)
Similarity:48/134 - (35%) Gaps:46/134 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SPNNKNTGGFPAEEEKQKENDQQKENDQQKE----NDQQ------------EEVQEEPTKDESKE 55
            :|||.........:.::...|::..:|:.:.    :|.:            ||..|||.|     
 Worm   164 APNNAKKAAMEVRDTRRNWLDEESSDDEAETTAPLSDVEKIASKVKVVKAVEEKAEEPVK----- 223

  Fly    56 AGSTPP-PKHMGVHNSARAELARLLVELLVQQ--AELDATNGGSV-----SGNLDGGNSNESQPL 112
            ..|||| |:                 |:::::  :|....:..||     ..:::...||..|..
 Worm   224 RPSTPPKPR-----------------EVVIKKDPSESPVASASSVIPTSKRKSINAETSNGRQRT 271

  Fly   113 NVPP 116
            ..||
 Worm   272 LAPP 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1D3csdNP_573358.1 None
cec-3NP_495652.1 CD_CSD 24..74 CDD:349274
Blue background indicates that the domain is not in the aligned region.

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