Protein Alignment HP1D3csd and cbx3

DIOPT Version :10

• Sequence 1: NP_573358.1
• Gene: HP1D3csd / 32906
• FlyBaseID: FBgn0030994
• Length: 179
• Species: Drosophila melanogaster
• Sequence 2: XP_017949990.2
• Gene: cbx3 / 100038121
• XenbaseID: XB-GENE-492315
• Length: 227
• Species: Xenopus tropicalis
• Alignment Length: 189
• Identity: 36/189 - (19%)
• Similarity: 66/189 - (34%)
• Gaps: 49/189 - (25%)

  Fly     1 MADKENSPNNKNTGGFPAEEEKQKENDQQKENDQQK---------ENDQQEEVQEEPTKDE---- 52
            |..|:|....|.....|.|...:|..|::..|.:.:         ::|...|.:|.....|
 Frog    54 MGKKQNGKGKKVEEAEPEEFVVEKVLDRRVVNGKVEYYLKWKGFTDSDNTWEPEENLDCPELIEA 118

  Fly    53 ---SKEAGSTPPPKHMGVHNSARAELARLLVELLVQQAELDATNGGSVSG--NLDGGNSNESQPL 112
               |::||...|                            |:....|||.  :.|..:..:.:.:
 Frog   119 FLNSQKAGKEKP----------------------------DSNKRKSVSDSESEDSKSKKKRETV 155

  Fly   113 NVPPTDALLVRGKAIENVMYSYMLGDTVYFIVTWKGSKWGEAVPVQEIKHVHPKLLIDY 171
            :.|...|   ||...|.::.:......:.|::.||.|...:.||.:|.....|:::|.:
 Frog   156 DKPRGFA---RGLDPERIIGATDSSGELMFLMKWKDSDEADLVPAKEANVKCPQVVIAF 211

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HP1D3csd	NP_573358.1	None
cbx3	XP_017949990.2	CD_HP1gamma_Cbx3	72..121	CDD:349299	8/48 (17%)
		CSD_HP1beta_Cbx1	160..217	CDD:349301	13/55 (24%)