DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP18B and Chn1

DIOPT Version :9

Sequence 1:NP_573352.2 Gene:RhoGAP18B / 32898 FlyBaseID:FBgn0261461 Length:1317 Species:Drosophila melanogaster
Sequence 2:XP_038961900.1 Gene:Chn1 / 84030 RGDID:620139 Length:580 Species:Rattus norvegicus


Alignment Length:601 Identity:123/601 - (20%)
Similarity:188/601 - (31%) Gaps:224/601 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   911 MTRIRRPAPPPPAQLATS---------------NTTSLAPRSDDSGCSCEAEDSYNHQHNPTPAI 960
            |..:.|| |..||.:..:               ...||.|....||....|.          ||.
  Rat     1 MVMLARP-PEGPAGMRRALARWRPRGRGVRGERRPPSLRPAGRASGRPARAR----------PAG 54

  Fly   961 PKPLKEEWERAVLAAGAVAGKRGV----------------------APRTGRKLRVR-------- 995
            |      |.|.|.|.|.:.|.||.                      |||.....|.|        
  Rat    55 P------WRRQVRARGGLPGCRGPGAPLANARVTFPRRGPPRPPRHAPRAAAPPRCRLPAAAGAR 113

  Fly   996 ------SNARLLLTDS----VLAWRETL----------QDVNC-CE------------------D 1021
                  |...|.|.|:    ...|:..|          :.|.| ||                  :
  Rat   114 SAGRRGSTMALTLFDTDEYRPPVWKSYLYQLQQEAPHPRRVTCTCEVENRPKYYGREFHGMISRE 178

  Fly  1022 EEDMIVPVTD---ILRAQQIQ-------------------------------------------- 1039
            |.|.::.|.:   ::|..|.|                                            
  Rat   179 ETDQLLSVAEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYDGKHFVGEKRFESIHDLVTDGLI 243

  Fly  1040 ----EDNEVQQTQQSTILQRYKSVSIGNLLDLPG-----------EDDKKSI----KNRMRMKFA 1085
                |....:...:.||...|:.:....|...|.           .|:|::.    .:..|:...
  Rat   244 TLYIETKAAEYIAKMTINPIYEHIGYTTLNREPAYKQHMAVLKETHDEKEATGQDGVSEKRLTSL 308

  Fly  1086 VNSNVFRINRS-PKSEK----KSRSRRGQVNSLYLDEQKYPLFAAPLSALELNMTDHPN----VP 1141
            |.....:.|.. ||.||    |..:.||.....|.....:.|.|..:...:..:..|..    ||
  Rat   309 VRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVP 373

  Fly  1142 R-----------------------------FVVDVCAYIEQPECIEQDGLYRASGNKVLVDELRK 1177
            .                             .|||:|....:...:..:||||.||...|:::::.
  Rat   374 NDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKM 438

  Fly  1178 KLTHVYDPRWLKTD-------DIHTLTSLHKQFFRELTSPLITQEAYERL---GRSLNDDAAIER 1232
                .:|....|.|       ||:.:|...|.:||:|..||||.:||.:.   .:.::.|..:|.
  Rat   439 ----AFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIVDPDEQLET 499

  Fly  1233 MSLAFDDMPEPNRSTLRFLIRHLTRVAAASASNRMPSTNLAIVWGPCLLSANQIQ-----LDIGR 1292
            :..|...:|..:..|||:|:.||.||......|.|.:.||.||:||.|:.:.::.     .||..
  Rat   500 LHEALRSLPPAHCETLRYLMAHLKRVTLHEKENLMSAENLGIVFGPTLMRSPELDPMAALNDIRY 564

  Fly  1293 MNMLAKVLIENYDRIF 1308
            ..::.::||:|.|.:|
  Rat   565 QRLVVELLIKNEDILF 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP18BNP_573352.2 RhoGAP 1141..1289 CDD:279014 49/191 (26%)
Chn1XP_038961900.1 SH2_a2chimerin_b2chimerin 163..249 CDD:198215 6/85 (7%)
C1_alphaCHN 322..378 CDD:410406 12/55 (22%)
RhoGAP_chimaerin 387..580 CDD:239837 54/196 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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