DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP18B and arhgap12b

DIOPT Version :9

Sequence 1:NP_573352.2 Gene:RhoGAP18B / 32898 FlyBaseID:FBgn0261461 Length:1317 Species:Drosophila melanogaster
Sequence 2:XP_021335715.1 Gene:arhgap12b / 393848 ZFINID:ZDB-GENE-040426-1727 Length:882 Species:Danio rerio


Alignment Length:929 Identity:188/929 - (20%)
Similarity:323/929 - (34%) Gaps:309/929 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   564 ALMAAPKPNGEAERPSTNSNNNTINCSSNNNNDN------------------------------- 597
            |||..|||  .|:.|:.   ....:|.|:|.|.|                               
Zfish    77 ALMPPPKP--RAKPPNV---LEITHCRSSNENLNQRAPTEKSTFGRPPPSTTPSPLPGQQTPPLL 136

  Fly   598 --ISNNNNNHHTVDNESGINNNKNNDGNANCNVNEQQQQQQQQPITQNCVIKVRRPAPKVPVRNP 660
              .||:|....:|..|..:.||.|:....:.|....|.:.:..|..|.|..|             
Zfish   137 LRDSNHNPGMKSVVAELTLLNNNNHHNFHHANPTLPQGRAESPPRDQGCQGK------------- 188

  Fly   661 NTSLSNPRQIEEEQTKPNGGKKDNLRGNSFAAENSSPEEQE-------------EESIYQPIWQF 712
               |:....::.:.:...|...:.:|.:|.:.:..|....|             |..:|..:.:.
Zfish   189 ---LTGGLSVDTDGSVSPGDGVEKMRNDSESGDELSSSSTEHIQSVSLSGQGRPESPVYTNLQEL 250

  Fly   713 K----TIEPVDQEIIEALPVEGEDEEDED---------------------EEDDDVD-DEEEDLG 751
            |    ::.||..  ...|.|.|:.|..:|                     ..|:.|. .:..:.|
Zfish   251 KICQSSVPPVPS--TSPLHVLGDWETHKDTSGRNFYFNRTTQERTWKPPRSRDNGVSRGDTSNTG 313

  Fly   752 DYDESLPSDADPDVMALQAAAVFAAGVR----------HKLSTSTLT------------------ 788
            |.:.....:..|...:.|:.:.:.:..|          |.|..|..|                  
Zfish   314 DMEPLSSEENCPSTHSSQSDSQYGSPPRGWSEELDEHGHTLYVSEYTNEKWIKHVDEQGRPYYYS 378

  Fly   789 ---KRSKMMMP----TPLPSPTASMDHGAWETDMEFMYSRESKEEADETLSLGSTVTNSTATLGS 846
               .||:..:|    :|..|..|...|           |.|.|::....|   :...:||..|. 
Zfish   379 ADGSRSEWELPKYNLSPPISGEAPKSH-----------SLERKQQEPIVL---TKWRHSTYVLD- 428

  Fly   847 ISSTGSSVTGQPKDTPKDLPADQQPSVVVHPILRNICIFYSQKDPKKYSAIFYDYHLSLVHQRFM 911
             .|...||..:| ::|:   :|..||...||           ..|.:...:..           :
Zfish   429 -ISDKESVNAKP-NSPE---SDSCPSSPKHP-----------STPSEKCGVLN-----------V 466

  Fly   912 TRIRRPAPPPPAQLATS-----NTTSLAPRSDDSGCSCEAEDSYNHQHNPT-PAIPKPLKEEWER 970
            |:|...........|::     .::.|..:...||      .|:::.||.: |.:...|...|:|
Zfish   467 TKITEHGKKVRKNWASTWTVLQGSSLLFAKGQGSG------TSWSYCHNGSFPELLLSLLSNWKR 525

  Fly   971 AV-------------------------------LAAGAV--AGKRGVAPRTGRKLRVRSNARLLL 1002
            ::                               |..|:|  |.|...:.:...:|:.|....||:
Zfish   526 SIKPRPAVSYTHCRRARASSFGGNQSKPEFTVDLRGGSVEWASKEKSSKKHVIELKTRVGTELLI 590

  Fly  1003 ---TDSVL-AWRETLQD-VNCCEDEEDMIVPVTDILRAQQIQEDNEVQQTQQSTILQRYKSVSIG 1062
               .|||: .|...|.: :|....|.|           :.|:||                     
Zfish   591 QSEIDSVINDWFRALSETINTHAWESD-----------EAIEED--------------------- 623

  Fly  1063 NLLDLPG-------EDDKKSIKNRMRMKFAVNSNVFRINRSPKSEKKSR-------SRRGQVNSL 1113
             :.:.||       :|.:.|.|||:....::.|:         .:||:|       :||..:.::
Zfish   624 -MPESPGSEKHDKEKDPRDSKKNRVVKNSSMESS---------EQKKTRVKLKKFLTRRPTLQAV 678

  Fly  1114 ----YLDEQKYPLFAAPLSALELNMTDHPNVPRFVVDVCAYIEQPECIEQDGLYRASGNKVLVDE 1174
                |:.:|   :|...|:|  |...:..:||.||.....::|... :..|||||.|||..::.:
Zfish   679 RDKGYIKDQ---VFGCSLTA--LCQREGTSVPNFVKMCIEHVENTG-LNVDGLYRVSGNLAVIQK 737

  Fly  1175 LRKKLTH-----VYDPRWLKTDDIHTLTSLHKQFFRELTSPLITQEAYERLGRSLNDDAAIERMS 1234
            ||..:.|     :.|.:|   :|||..|...|..||||..||.|..::.....::.:....:|:.
Zfish   738 LRFAVNHDEKVNLDDSKW---EDIHVTTGALKMLFRELPEPLFTYASFNDFVEAIKNSDYKQRVQ 799

  Fly  1235 LAFD---DMPEPNRSTLRFLIRHLTRVAAASASNRMPSTNLAIVWGPCLLSANQIQLDIGRM--- 1293
            ...|   .:|:||:.|::.|.:||.||......|||.:.::|||:||.||   :.:::.|.|   
Zfish   800 SIKDLIKQLPKPNQETMKVLFKHLKRVIDHGEVNRMTTQSVAIVFGPTLL---RPEIETGNMAVH 861

  Fly  1294 ----NMLAKVLIENYDRIF 1308
                |.:.::::..|:.||
Zfish   862 MVYQNQIVELILLEYENIF 880

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP18BNP_573352.2 RhoGAP 1141..1289 CDD:279014 50/155 (32%)
arhgap12bXP_021335715.1 SH3_ARHGAP12 17..76 CDD:213003
SH3-WW_linker 73..267 CDD:318759 38/212 (18%)
WW 271..297 CDD:306827 2/25 (8%)
WW 364..389 CDD:306827 2/24 (8%)
PH_ARHGAP9-like 459..611 CDD:270053 27/168 (16%)
RhoGAP_ARHGAP27_15_12_9 689..875 CDD:239868 58/194 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000816
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23176
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.010

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