DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP18B and tum

DIOPT Version :9

Sequence 1:NP_573352.2 Gene:RhoGAP18B / 32898 FlyBaseID:FBgn0261461 Length:1317 Species:Drosophila melanogaster
Sequence 2:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster


Alignment Length:636 Identity:125/636 - (19%)
Similarity:213/636 - (33%) Gaps:199/636 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   741 DDVDDEEEDLGDYDESL---------------PSDADPDVMALQAAAVFAAGVRHKLSTSTLTKR 790
            :::|.....:||.:..|               .::.:.|.|..:..|| |..:||:.:.:..| |
  Fly    54 NELDKSLTKMGDLEGKLFHARRIIDMEIKARRQAEHERDAMESKIMAV-ADLLRHERNLNNET-R 116

  Fly   791 SKMMMPTPLPSPTASMDHGAWETDMEFMYSRESKEEADETLSLGSTVTNSTATLGSISSTGSSVT 855
            .|:.....|||                  ||:.|       ||.:  .....:.|.|:||||   
  Fly   117 DKLAFLHTLPS------------------SRKRK-------SLNA--VREDKSYGDINSTGS--- 151

  Fly   856 GQPKDTPKDLPADQQPSVVVHPILRNICIFYSQKDPKKYSAIFYDYHLSLVHQRFMTRIRRPAPP 920
                                  :|.::.|.:|:.|       |.|...|.     ..|..||:.|
  Fly   152 ----------------------LLSDLSITHSEDD-------FLDVRTSK-----SWREHRPSLP 182

  Fly   921 PPAQLATSNTTSLAPRSDDSGCSCEAEDSYNHQHNPTPAIPKPLKEEWERAVLAAGAVAGKRGVA 985
                                             .|..|::..      :|:.|:.|......|..
  Fly   183 ---------------------------------KNQIPSVGN------KRSRLSTGLNGSMSGTT 208

  Fly   986 PRTGRKLRVRSNARLLLTDSV-LAWRETLQDVN------CCEDEEDMIVPVTDILRAQQIQED-- 1041
            |.||:..|          .|| :...:...||.      |...:..:......::||:...|.  
  Fly   209 PTTGKSRR----------SSVGIGVEQHTVDVGQGAERFCATTKVTIPQDGQGVIRAESTIESLP 263

  Fly  1042 ----NE-----VQQTQQSTILQRYKS---VSIGNLLDLPGEDDKKSIKNRMRMKFAVNSNVFRIN 1094
                ||     :..|.:.::|:...:   ..:..:......:....:::|..|:....|....:.
  Fly   264 VIAGNERIGDGLSSTPRRSVLKEATAPPLTPVNAMAPHVVAESGTPLQHRPLMRNHTFSQKTFLR 328

  Fly  1095 RSPKSEKKSRSRRGQVNSLYLD-------EQKY-------PLFAAPLSALELNMTDH-------- 1137
            .....:.:.|.|.|.|.....|       :.:|       |....|.:.   .||.:        
  Fly   329 GDNCVQCQKRIRFGAVGLRCRDCPVRCHIDCRYLLTVSCVPQTGTPTTK---TMTGYVTDFAPSI 390

  Fly  1138 -PNVPRFVVDVCAYIEQPECIEQDGLYRASGN----KVLVDE-LRKKLTHVYDPRWLKTDDIHTL 1196
             |.:|..:|. |....:...:.:.||||.|.:    |.|.:: ||.|.|    |. |...||:.|
  Fly   391 APMIPALIVH-CVNEIEARGLTEVGLYRLSSSEREYKALKEQFLRGKAT----PH-LGNTDIYVL 449

  Fly  1197 TSLHKQFFRELTSPLITQEAYERLGRSL-NDD--AAIERMSLAFDDMPEPNRSTLRFLIRHLTRV 1258
            ....|.|.|.||.|||....::....:: |.|  .|.:.:..:...:|:.||.||.|||.|..|:
  Fly   450 CCCVKDFLRSLTEPLIPTSQWKDFANAVQNPDTKTAQDMLVKSVKQLPQANRDTLAFLILHFQRI 514

  Fly  1259 AAASASNRMPSTNLAIVWGPCLL-------SANQIQLDIGRMNMLAKVLIE 1302
            |..... .||..|:::::||.::       ..:.|..::.....:.|.|:|
  Fly   515 AQCPVV-LMPIDNISLIFGPTIVGYSTPDPDQHAIYTEVFTQKQVMKALLE 564

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP18BNP_573352.2 RhoGAP 1141..1289 CDD:279014 47/162 (29%)
tumNP_610912.2 C1 319..367 CDD:237996 7/47 (15%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 51/191 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3564
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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