DRSC/TRiP Functional Genomics Resources

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Protein Alignment SdhBL and sdhb-1

DIOPT Version :9

Sequence 1:NP_001285420.1 Gene:SdhBL / 32887 FlyBaseID:FBgn0030975 Length:437 Species:Drosophila melanogaster
Sequence 2:NP_495992.1 Gene:sdhb-1 / 174482 WormBaseID:WBGene00006433 Length:298 Species:Caenorhabditis elegans


Alignment Length:277 Identity:172/277 - (62%)
Similarity:205/277 - (74%) Gaps:7/277 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 ASTGKPASGNAPATPPPPPPPPPAKSAPPVKAKKP--RLKTFEIYRWK---PGDQPQTQTYEVDL 210
            |:..:.||| ||||........|:......|.||.  |:|||||||:.   ||.:|..|.::|||
 Worm    16 ANAIRAASG-APATAAAAEASFPSTDDVAAKTKKTGNRIKTFEIYRFNPEAPGAKPTVQKFDVDL 79

  Fly   211 EQCGAMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNINGTNTLACVSSIDQNESKCCRIYPL 275
            :|||.|:||||||||||:||||||||||||||||||||||.|.|||||:..||.:.||..:||||
 Worm    80 DQCGTMILDALIKIKNEVDPTLTFRRSCREGICGSCAMNIGGQNTLACICKIDSDTSKSTKIYPL 144

  Fly   276 PHLYVVRDLVPDMSQFYDQYRSIQPWLQRKDLKREAGTAQYLQSVDDRLVLDGLYECILCACCQT 340
            ||::||:||||||:.||.||.|||||:|:| .....|..|..|||.:|..|||||||||||||.|
 Worm   145 PHMFVVKDLVPDMNLFYAQYASIQPWIQKK-TPLTLGEKQMHQSVAERDRLDGLYECILCACCST 208

  Fly   341 SCPSYWWNSNKYLGPAVLMQAYRWVIDSRDEATEQRLDFLKDPWKLYRCHSIMNCTNTCPKHLNP 405
            ||||||||::||||||||||||||||||||:...:||..:.|.:..::||:|||||.||||||||
 Worm   209 SCPSYWWNADKYLGPAVLMQAYRWVIDSRDDYATERLHRMHDSFSAFKCHTIMNCTKTCPKHLNP 273

  Fly   406 ARAIIQLKQLLVGLKKK 422
            |:||.::|.||.|...|
 Worm   274 AKAIGEIKSLLTGFTSK 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdhBLNP_001285420.1 sdhB 189..417 CDD:235652 155/230 (67%)
Fer2_3 189..293 CDD:289830 74/106 (70%)
Fer4_8 330..403 CDD:289926 52/72 (72%)
sdhb-1NP_495992.1 PLN00129 1..284 CDD:215067 168/269 (62%)
Fer2_3 55..161 CDD:289830 73/105 (70%)
Fer4_17 199..272 CDD:290268 52/72 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159393
Domainoid 1 1.000 176 1.000 Domainoid score I2155
eggNOG 1 0.900 - - E1_COG0479
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 382 1.000 Inparanoid score I1182
Isobase 1 0.950 - 0 Normalized mean entropy S140
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1264157at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm14600
orthoMCL 1 0.900 - - OOG6_100664
Panther 1 1.100 - - O PTHR11921
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1851
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1110.750

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