DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp39 and Usp8

DIOPT Version :10

Sequence 1:NP_573334.1 Gene:Usp39 / 32881 FlyBaseID:FBgn0030969 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_650948.2 Gene:Usp8 / 42509 FlyBaseID:FBgn0038862 Length:896 Species:Drosophila melanogaster


Alignment Length:427 Identity:99/427 - (23%)
Similarity:182/427 - (42%) Gaps:77/427 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 DNYEIIDSSLDDIKYVL---NPTF--TRQEISKLDQL---QPKH-SRTVDGVL-YLP-------- 156
            ::..::..||:.:..:.   :||.  .:.||...|:.   ||:: .||...|. :.|        
  Fly   496 EDVHVVSDSLESLLQLTGDPDPTIAPNKAEIPTFDRAMKPQPRNVERTSQRVRDFSPVIGQNVGR 560

  Fly   157 GVVGLNNIKANDYCNVVLHALSHVGPLRDYFLQKQSYAHVVRPPGDSVFTLVQRFGELMRKMWNP 221
            |:.||.|:....|.|.:|..||:...|.:|.: ...|.:.:.....:...:::....|::::||.
  Fly   561 GLTGLKNLGNTCYMNSILQCLSNTPQLTEYCI-SDKYKNYISRSNKTNGQVIEEVAALIKELWNG 624

  Fly   222 RNFKSHVSPHEMLQAVVLWSSKRFQITEQGDPIDFLS----WF---LNTLH------------RA 267
            : :|...|  ..|:.||....|.|:..:|.|..:||:    |.   |.|||            :|
  Fly   625 Q-YKCVAS--RDLRYVVGQYQKIFRGVDQQDSHEFLTILMDWLHSDLQTLHVPRQREMISASEKA 686

  Fly   268 -LKGNKHPNSSILYKIFLGEMKIYTRKMPPVELDDAAKAQLLATEEYKDQVEDKNFIYLTCDLPP 331
             |:..|...|.||: :|.|:||              :..:.:|.  :|:....::|..|:.:|||
  Fly   687 WLEFTKAKESMILH-LFYGQMK--------------STVKCVAC--HKESATYESFSNLSLELPP 734

  Fly   332 PPLFTDEFRENIIPQVN----LYQLLSKFNGTAEKEYKTYKANFMKRFEITRLPQFIILYIKRF- 391
                    ..|:. |:|    :|....:.:|......|| |.:.:|:.:|::||..:::::||| 
  Fly   735 --------NSNVC-QLNQCMDMYFSGERIHGWNCPSCKT-KRDAIKKLDISKLPPVLVVHLKRFY 789

  Fly   392 --TKNTFFLEKNPTIVNFPIKHVDFGDILGMRQRDKDVKDTKYNLVANIVHDGDPKKGTYRAHIL 454
              ..|:....|....:.||::::|....:. |...:.|....|.|.|...|.|..:.|.|.|...
  Fly   790 ADPSNSGSYMKKQNYLRFPLENLDMNPYIA-RAESRAVTPKTYQLYAVSNHYGTMEGGHYTAFCK 853

  Fly   455 HKANGQWYEMQDLHVTEILPQMITLTESYIQIYERCP 491
            ....|:|::..|..|:.:....:..:.:||..|...|
  Fly   854 SANYGKWFKFDDQVVSALDSSNVVSSAAYILFYTWLP 890

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp39NP_573334.1 Peptidase_C19M 39..488 CDD:239134 97/422 (23%)
Usp8NP_650948.2 USP8_dimer 2..114 CDD:462647
RHOD 148..278 CDD:444705
Smc <361..>511 CDD:440809 2/14 (14%)
Peptidase_C19R 564..887 CDD:239139 83/354 (23%)
Blue background indicates that the domain is not in the aligned region.

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