DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp39 and not

DIOPT Version :9

Sequence 1:NP_573334.1 Gene:Usp39 / 32881 FlyBaseID:FBgn0030969 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_001287106.1 Gene:not / 40030 FlyBaseID:FBgn0013717 Length:496 Species:Drosophila melanogaster


Alignment Length:476 Identity:105/476 - (22%)
Similarity:178/476 - (37%) Gaps:89/476 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 INVYACLVCGKYFQGRGTNTHAYTHSVGEAHHVFLNLHTLRFYCLPDNYEIIDSSLDDIKYVLNP 128
            |.:||||.| .||..||  .|..:|...:.|:|.|.|.....||......|.|:...:.. ::|.
  Fly    54 IQLYACLHC-IYFGCRG--AHITSHLRSKKHNVALELSHGTLYCYACRDFIYDARSREYA-LINR 114

  Fly   129 TFTRQEISKLDQLQPKHSRTVDGVLYLP-------------GVVGLNNIKANDYCNVVLHALSHV 180
            ....:::.|.....|....|.:..|.|.             |:.||.|:.|..:.|.::.||.|.
  Fly   115 KLEAKDLQKSIGWVPWVPTTKETNLLLANARRRLVRPNQTIGLRGLLNLGATCFMNCIVQALVHT 179

  Fly   181 GPLRDYFL-------QKQSYAHVVRPPGDSVFTLVQRFGELMRKMWNPRNFKSHVSPHEMLQAVV 238
            ..|.|||:       .|.|:.           .||.....|.::.::  ..:|.:|.|.:|.  :
  Fly   180 PLLSDYFMSDRHDCGSKSSHK-----------CLVCEVSRLFQEFYS--GSRSPLSLHRLLH--L 229

  Fly   239 LWS-SKRFQITEQGDPIDFLSWFLNTLHR-----------------ALKGNKHPNSS-------- 277
            :|: :|.....||.|..:|....|:.|||                 :..|....|||        
  Fly   230 IWNHAKHLAGYEQQDAHEFFIATLDVLHRHCVKAKAEHESKSNSSGSGSGTNSSNSSSSHCYGQC 294

  Fly   278 --ILYKIFLGEMKIYTRKMPPVELDDAAKAQLLATEEYKDQVEDKNFIYLTCDLPPPPLFTDEFR 340
              |:.:||.|.:          :.|...:|....:..|..      |..::.||...........
  Fly   295 NCIIDQIFTGML----------QSDVVCQACNGVSTTYDP------FWDISLDLGETTTHGGVTP 343

  Fly   341 ENIIPQVNLYQLLSKFNGTAEKEYKTYKA--NFMKRFEITRLPQFIILYIKRFTKNTFFLEKNPT 403
            :.:|..:..|.........|:.:..|.|:  ...|:|.:..||..:..::|||..:.....|..:
  Fly   344 KTLIDCLERYTRAEHLGSAAKIKCSTCKSYQESTKQFSLRTLPSVVSFHLKRFEHSALIDRKISS 408

  Fly   404 IVNFPIKHVDFGDILGMRQRDKDVKDTKYNLVANIVHDGDPKKGTYRAHILHKANGQWYEMQDLH 468
            .:.||   |:|.....|.::.....|.:::|.|.:.|.|....|.|.|::.|:.: .|.:..|..
  Fly   409 FIQFP---VEFDMTPFMSEKKNAYGDFRFSLYAVVNHVGTIDTGHYTAYVRHQKD-TWVKCDDHV 469

  Fly   469 VTEILPQMITLTESYIQIYER 489
            :|....:.:..:|.|:..|.:
  Fly   470 ITMASLKQVLDSEGYLLFYHK 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp39NP_573334.1 Peptidase_C19M 39..488 CDD:239134 104/473 (22%)
UCH 158..487 CDD:278850 77/365 (21%)
notNP_001287106.1 zf-UBP 46..103 CDD:307999 19/51 (37%)
Peptidase_C19D 158..489 CDD:239125 77/365 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR21646
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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