DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp39 and Usp20-33

DIOPT Version :10

Sequence 1:NP_573334.1 Gene:Usp39 / 32881 FlyBaseID:FBgn0030969 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_610943.2 Gene:Usp20-33 / 36580 FlyBaseID:FBgn0033916 Length:975 Species:Drosophila melanogaster


Alignment Length:490 Identity:104/490 - (21%)
Similarity:166/490 - (33%) Gaps:184/490 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 GVVGLNNIKANDYCNVVLHALSHVGPLRDYFLQ---------KQSYAHVVRPPGDSVFTLVQRFG 212
            |:|||.||....|.|..|.|||::.|:..||:.         :|| |...:|.|     |.:.:.
  Fly    78 GLVGLQNIANTCYMNSALQALSNLPPMTHYFINCSDLVEYIAEQS-ARRCKPGG-----LAKSYR 136

  Fly   213 ELMRKMW----NPRNFKSHVSPHEMLQAVVLWSSKRFQITEQGDPIDFLSWFLNTLHRAL----- 268
            .||:::|    :|:.|   ::|..:|.. :......|:..:|.|..:||..|::.||..|     
  Fly   137 RLMQEIWQDVDDPKEF---IAPRGILYG-IRTVHPMFRGYQQHDTQEFLRCFMDQLHEELTEQVS 197

  Fly   269 ---KGNKHPNSSILYKIFLGEMKIYTRKMPPVELDD-----AAKAQ------------------- 306
               :....|....|            ::..|.|.||     ||.|.                   
  Fly   198 MLPQTQNQPQYQSL------------QQQQPSETDDENDDEAAPASLSHASESEYDTCESSMSER 250

  Fly   307 ----LLATEEYKD------------------------QVEDKNF-----------------IY-- 324
                ||.||.:..                        |.:.||.                 ::  
  Fly   251 SAEVLLKTEYFVTPCRTNGSNSGLPEGHSVQLQQAPLQHQQKNASSAEQKPIEAARSIISDVFDG 315

  Fly   325 --------LTCD-------------LPPP------------------------PLFTDE----FR 340
                    ||||             ||.|                        ...|:|    :.
  Fly   316 KLLSSVQCLTCDRVSTREETFQDLSLPIPNRDFLNVLHQTHSLSVQSLNAAETSARTNEGWLSWM 380

  Fly   341 ENII------PQVNLYQLLSKFNGTAEKE----YKTYKANFM----KRFEITRLPQFIILYIKRF 391
            .|::      |.|.||..::.|....|.:    |...:.|.:    |...:..||:.:.:::|||
  Fly   381 WNMLRSWIYGPSVTLYDCMASFFSADELKGDNMYSCERCNKLRTGIKYSRVLTLPEVLCIHLKRF 445

  Fly   392 TKNTFFLEKNPTIVNFPIKHVDFGDILGMRQRDKDVKD--TKYNLVANIVHDGDPKKGTYRAHIL 454
            ..:..:..|..:.|.||::..|....:     .||.|.  ..|||.:.|.|.|....|.|.....
  Fly   446 RNDLSYSSKISSDVYFPLEGFDMRPYI-----HKDCKSEVAIYNLSSVICHHGTVGGGHYTCFAR 505

  Fly   455 HKANGQWYEMQDLHVTEILPQMITLTESYIQIYER 489
            :..||:|||..|..|||:..:::...::|:..|.:
  Fly   506 NTLNGKWYEFDDQFVTEVSSELVQSCQAYVLFYHK 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp39NP_573334.1 Peptidase_C19M 39..488 CDD:239134 103/487 (21%)
Usp20-33NP_610943.2 UCH 80..538 CDD:425685 102/484 (21%)
DUSP 560..643 CDD:197831
DUSP 667..755 CDD:197831
Blue background indicates that the domain is not in the aligned region.

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