DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shop and suox

DIOPT Version :10

Sequence 1:NP_573331.1 Gene:shop / 32878 FlyBaseID:FBgn0030966 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_001120571.1 Gene:suox / 100145725 XenbaseID:XB-GENE-985202 Length:568 Species:Xenopus tropicalis


Alignment Length:571 Identity:273/571 - (47%)
Similarity:353/571 - (61%) Gaps:34/571 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 RHHQHQRHHRRLLLTTSRGSNGERE-EQQHSQWS--SPGSRSEQLFYAAFWAGGLTLGYHWLTDK 76
            |.|:.|||...|.|   |....|.. :::||..:  ..|:..|...:.....|.| ||.      
 Frog    16 RSHRLQRHMLNLYL---RSCTVESVFDRKHSTEARLKAGNGKETTKWGIALTGAL-LGI------ 70

  Fly    77 KNHVLLEG--QKVASEEELEATARLWHVTNRRELPTYRAEEVEQHNSVEKRIWVTYGLGVYDVTD 139
             ..||:.|  :|..::.||..     |.......|.|..::|.:|.|:|.|:||||...|:|:|:
 Frog    71 -GTVLIYGVPKKRVAQAELTT-----HTVATSTFPLYSKKDVSKHASMESRVWVTYEGEVFDITE 129

  Fly   140 FVENHPGGDKILMAAGSAIDPFWGIYQQHNTLEVLELLEGFRIGNLEGLVVTNVDDELGSPWSQE 204
            |:|.||||.:|::|||.|::|||.:|..|....|||:|:.:::|.|.........|| ..|:|||
 Frog   130 FIELHPGGSRIMLAAGGALEPFWALYGVHKNEHVLEILKEYKVGELNSAEKDEPVDE-SDPYSQE 193

  Fly   205 PQRHALLKPASKRPFNAEPPIGLLAEQFYTPNELFYVRNHLPVPVINPEDYELEIE---GGAKDK 266
            |.||.:||..|.:|||||||..:|.|.|.||.:||:.|||||||.|||.||:||||   |..:||
 Frog   194 PSRHPVLKVNSMKPFNAEPPPYMLTENFITPTDLFFKRNHLPVPRINPNDYKLEIERPNGKTQDK 258

  Fly   267 --TLTLDGIKA-LPKHSVTAAIMCGGNRRSEMTKVKAVKGLSWGAGAVGNAKWSGARLCDILREQ 328
              .|||..:|. .|||.:|..:.|.|||||||:.||.||||.|.:||:..|.|:||||.|:|.|.
 Frog   259 PLNLTLSDLKTKFPKHEITVTLQCAGNRRSEMSAVKPVKGLDWNSGAISTAHWAGARLRDVLLEA 323

  Fly   329 GVQPD--ETKHVIFEGADLDPTSHPYGASIPLAKALDPRGDVILAYEMNDEPLSRDHGFPIRVIV 391
            |...|  :.:||.|||.|.|.|...|||||...:|:....:||||||||.:.|.:|||||:||||
 Frog   324 GYTEDCSQAQHVHFEGLDRDMTGTNYGASISFQQAMARENEVILAYEMNGQELPQDHGFPLRVIV 388

  Fly   392 PGTVGARNVKWLTRIVVADKESDSHWQQNDYKGFSPSTDWDTVDFSKSDAIQAMPVTSAICTPQP 456
            ||.|||||||.|.:|:|:.:||.|||||||||||:|..|||.|||:.|.:||.:||.|||..|.|
 Frog   389 PGVVGARNVKCLGKIIVSKEESGSHWQQNDYKGFNPCVDWDNVDFASSPSIQDLPVQSAITEPHP 453

  Fly   457 GARVKVDDDEGHITVRGYAWSGGGRKIVRVDLTNDEGVSWHVAELEQEEMPDGRHYGWSLWTARL 521
            |.:| ..:.||.:||:|||||||||:|||||::.|.|.:|.||||..|:...|:.:.|.||...:
 Frog   454 GQKV-TPNFEGELTVKGYAWSGGGREIVRVDVSVDGGKTWKVAELTGEKQKTGQAWAWKLWQLNV 517

  Fly   522 PVSEAQRRAGDVEIWAKAVDSAYNVQPEKFEHIWNLRGVLANAYHKVKVKI 572
            |...   ...|..|..|||||:|||||:....||||||||.||:|:|.|.:
 Frog   518 PFPS---NISDFTIICKAVDSSYNVQPDTVAPIWNLRGVLNNAWHRVHVTV 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shopNP_573331.1 Cyt-b5 112..185 CDD:459698 33/72 (46%)
eukary_SO_Moco 211..572 CDD:239029 204/368 (55%)
suoxNP_001120571.1 Cyt-b5 102..175 CDD:459698 33/72 (46%)
eukary_SO_Moco 199..565 CDD:239029 204/369 (55%)

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