DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment htk and Arid4b

DIOPT Version :9

Sequence 1:NP_573330.3 Gene:htk / 32877 FlyBaseID:FBgn0085451 Length:2486 Species:Drosophila melanogaster
Sequence 2:XP_008769986.1 Gene:Arid4b / 84481 RGDID:619919 Length:1319 Species:Rattus norvegicus


Alignment Length:1446 Identity:395/1446 - (27%)
Similarity:607/1446 - (41%) Gaps:361/1446 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQQMDDPPSLPVGTEVSAKYKGAFCEAKVSKVVRNIKVKVAYKQGLGSGIVSDDAIKAPTGQLRV 65
            |:.:|:||.|.|||:|||||:|||||||:....|.:||||.::....:..|.||.||.|   |:|
  Rat     1 MKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGP---LKV 62

  Fly    66 GAVVEVRHPDRKELVEATITKIQDCSQYTVVFDDGDITTLRRTALCLKSGRHFNESETLDQLPLT 130
            ||:|||::.| ....||.|.|:.|.|.|||||||||..||||::||||..|||.|||||||||||
  Rat    63 GAIVEVKNLD-GAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESETLDQLPLT 126

  Fly   131 HPEHFGNPVVGGR--RGRRRGHLNED----SSEDDDESDAKEVVNEKEENIGKVVCVETESKKKD 189
            :|||||.||:|.:  ||||..|:.|:    ||.||||.|.|:.    :|.:||||||:..|..|.
  Rat   127 NPEHFGTPVIGKKTNRGRRSNHIPEEESSSSSSDDDEDDRKQT----DELLGKVVCVDYISLDKK 187

  Fly   190 KEKWFPALVVAPTAQATVRIRVKDEYLVRSFKDGRYYTVPKKEATEFTREVASKQDVPAVQA--- 251
            |..|||||||.|.....:.:: ||..||||||||::.:||:|:..|.|.:.|.|.|....||   
  Rat   188 KALWFPALVVCPDCSDEIAVK-KDNILVRSFKDGKFTSVPRKDVHEITSDTAPKPDAVLKQAFDQ 251

  Fly   252 ALEFLDSSVLPAHWDRDSLFGLTNISSDDEGEIDSDSSDDEPH----------------EEKDRF 300
            ||||..|..:||:|..:    |...||..|.|.:.:..|||..                ||::.|
  Rat   252 ALEFHKSRTIPANWKTE----LKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEEIEPFPEERENF 312

  Fly   301 VAQLYKYMDDRGTPLNKVPSILSRDVDLYRLFRAVQKRGGYNRVTSQNQWKLIAMRLGFTPCTVS 365
            :.||||:|:|||||:||.|.:..|:::|::|||.|.|.||::.:.|...||.:...||     :.
  Rat   313 LQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGFDNIESGAVWKQVYQDLG-----IP 372

  Fly   366 VMNL-----VKQAYKKFLQPYGDFHR--KLGCSMLMTSRNSNRSKGRSLVRANSVASPKPMETMK 423
            |:|.     ||.||||:|..:.::.|  .:...|.:..:..|                ||.:..:
  Rat   373 VLNSAAGYNVKCAYKKYLYGFEEYCRSANIDFQMALPEKVLN----------------KPCKDCE 421

  Fly   424 TETI----SKLAQPNQTNVVASTSSSAAAASVAASSTPARAVSTASQSAAEESGNTSESSVVVEP 484
            .:.|    ...|:..:.||..|.:      .:....|||.              :.||....::|
  Rat   422 NKEIKVKEESDAEIKEVNVEDSKN------MIPKEETPAE--------------DESERKENIKP 466

  Fly   485 PKKQRKGSAASSQQGKVKSLVEKYEEKSTAVQATSSGTVAGSGASASAAAMPTTSAAASTATNLS 549
            ....:||            |:|                           .:|..|          
  Rat   467 SLGSKKG------------LLE---------------------------CIPAQS---------- 482

  Fly   550 SATSGGSATIATTAMNKDAESDLPLAKIKAAAVAAASTRHSMEKETNISSGSSASASSKANSAEM 614
                             |.|.:..:.|::        .:.|:|.:...::.:..:.|::.::.|.
  Rat   483 -----------------DQEKEANITKLE--------EKESLEDKDGATARAEEALSTEVDAEEE 522

  Fly   615 Q-RSRDASPSVAAPPSAGASTSGAAATAQTASNKKEKHQRSKQADKEKDKDKEEKQASSGKRKKE 678
            | ||.|                         ...||:.:..::.::|:::|:||.:........|
  Rat   523 QARSGD-------------------------ETNKEEDEDDEEIEEEEEEDEEEDEDEDDDDNNE 562

  Fly   679 KISVEKIDTGDFVVGIGDKLKVNYHEKKSPSSHGSTYEAKVIEISVQRGVPMYLVHYTGWNNRYD 743
            :...|....       |.|::|.|...|:.    ..|||.:.:..|:.|..:|||||.|||.|||
  Rat   563 EEEFECYPP-------GMKVQVRYGRGKNQ----KMYEASIKDSDVEGGEVLYLVHYCGWNVRYD 616

  Fly   744 EWVPRERIAENLTKG--------------SKQKTRTISTSSANSGSGGGGGGGGGGGGGGGGGGG 794
            ||:..::|.....|.              .|:|.|....|..|                      
  Rat   617 EWIKADKIVRPADKNVPKIKHRKKIKNKLDKEKDRDEKYSPKN---------------------- 659

  Fly   795 SLLVQGSQPPGVSDKQPGKDGCSKMSPSSGNSTGPG---APSLSGSLGGASSTPSLLSTVVKTPP 856
            ..|.:.|:.|..|:  |..:..||:..:...::..|   :..::..|.|..::.|         .
  Rat   660 CKLRRLSKSPFQSN--PSPEMVSKLDLADAKNSDTGHIKSIEITSILNGLQASES---------S 713

  Fly   857 TGGAKRGRGRSDSMPPRSTTPSSVVAHSGRTKSPAASQ-----PQLQQQMKKRPTRVVPGTT--T 914
            ...:::...|....|..|:...|.|.||..::|...|:     |.|.::.|..|..|:..|.  :
  Rat   714 AEDSEQEEERCAQDPESSSKDESKVEHSAHSRSELISKEELSSPSLLEENKVHPDLVIAKTVSKS 778

  Fly   915 PRRV-SDASMASE-SDSDSDEPVRRPKRQSAKD------KPQA--GK---------AQPPGKGRL 960
            |.|: .|....|| :|.:.::.:.:.::...||      |||.  ||         .|....|:.
  Rat   779 PERLRKDVEAISEDTDFEEEDEITKKRKDVKKDTTDKALKPQTKRGKRRYCNTDECLQSGSPGKK 843

  Fly   961 ASSASSTAP-AAHPSDDSEEDEEEEEPSAARAASSKQQ---QQQASSLRG-------SRAGGNRA 1014
            .....|..| ....|.:|..||:|||.|.|:...:|:.   :::..|||.       |.....|.
  Rat   844 EDRTKSKEPLCTGNSSNSSSDEDEEEKSKAKMTPTKKYNGLEEKRKSLRTTSFYSGFSEVAEKRI 908

  Fly  1015 M---SSGAASAKGRDYDLSEIRSELKGFQPKLLTNAASNEERKDLAKKEPSDEP-------ALQD 1069
            .   :|.......|..|..::.|.::|..||.......::...:.|...|...|       :||.
  Rat   909 KLLNNSDERLQNNRAKDRKDVWSSIQGQWPKKTLKELFSDSDTEAAASPPHAAPDEGTVEESLQT 973

  Fly  1070 IKKEPKLESSAKSSSTE----LSSETESYADEDSQSSDYRKQLKGSGAG---KKEPTA--SPSKL 1125
            :.:|   ||.:.:...|    .|.:::...::..:.||.:.:...||:.   ...||.  |||. 
  Rat   974 VAEE---ESCSPNMELEKPLPTSVDSKPVEEKPLEVSDRKTEFPSSGSNSVLNTPPTTPESPSS- 1034

  Fly  1126 HHEPVTKRELAVKEEPLKIEPKTEPKEEETKSKPFLSGADIKPTALIAPAR----FGNTSAA--- 1183
                ||..|.:.::..:.:.....|.:||.:|....:.:.|:..:::...:    .||:|.|   
  Rat  1035 ----VTVTETSQQQSSVTVSVPLPPNQEEVRSIKSETDSTIEVDSVVGELQDLQSEGNSSPAGFN 1095

  Fly  1184 QAASSSGSSSTTAKYTSVIVEKPLTIGGKKSVEQHVPKKAELLKKQSGGAGGTAASSSAASQESK 1248
            .:.|||.|:....::.    ||..|  |:|.|            |.:.|.|    |||...:.|.
  Rat  1096 ASVSSSSSNQPEPEHP----EKACT--GQKRV------------KDTQGVG----SSSKKQKRSH 1138

  Fly  1249 KFAEPVASLKVEMPAACSPSSSSSSSSSFCSTGSAVSSSSATRSLPDMSKLEISSGTVPGATPGA 1313
            | |..|.:.|       ....::||.|...|.|.:|:.:.|.:|:|...|...|.......:||.
  Rat  1139 K-ATVVNNKK-------KGKGTNSSDSEDLSAGESVTKTQAIKSVPTGMKTHNSKSPARIQSPGK 1195

  Fly  1314 AA---------LQPSN 1320
            ..         .:|||
  Rat  1196 CGKNGDKDPDLKEPSN 1211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htkNP_573330.3 RBB1NT 171..262 CDD:285392 43/93 (46%)
ARID 299..381 CDD:279697 37/86 (43%)
Tudor-knot 692..751 CDD:288553 23/58 (40%)
Arid4bXP_008769986.1 TUDOR 58..113 CDD:197660 32/58 (55%)
RBB1NT 169..262 CDD:285392 43/97 (44%)
ARID 311..394 CDD:198082 37/87 (43%)
Tudor-knot 571..624 CDD:288553 23/63 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352283
Domainoid 1 1.000 182 1.000 Domainoid score I3367
eggNOG 1 0.900 - - E1_KOG2744
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 412 1.000 Inparanoid score I1796
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003167
OrthoInspector 1 1.000 - - otm45563
orthoMCL 1 0.900 - - OOG6_106607
Panther 1 1.100 - - O PTHR13964
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2560
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1110.840

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