DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment htk and AT1G02740

DIOPT Version :9

Sequence 1:NP_573330.3 Gene:htk / 32877 FlyBaseID:FBgn0085451 Length:2486 Species:Drosophila melanogaster
Sequence 2:NP_171774.2 Gene:AT1G02740 / 839455 AraportID:AT1G02740 Length:327 Species:Arabidopsis thaliana


Alignment Length:115 Identity:30/115 - (26%)
Similarity:41/115 - (35%) Gaps:44/115 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   715 YEAKVIEISVQRGVPMYLVHYTGWNNRYDEWVPRERIA----ENLTKGSKQKTRTISTSSANSGS 775
            |||||:::..:.....|.|||.|||..:|||:..:.:.    ||:   .|||.            
plant    67 YEAKVLKVEFKDNEWKYFVHYIGWNKSWDEWIRLDCLLKHSDENI---EKQKE------------ 116

  Fly   776 GGGGGGGGGGGGGGGGGGGSLLVQGSQPPGVSDKQPGKDGCSKMSPSSGN 825
                                   ||.:..|:......|  .|||.|.|.|
plant   117 -----------------------QGLKQQGIKSAMAWK--VSKMKPRSPN 141

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htkNP_573330.3 RBB1NT 171..262 CDD:285392
ARID 299..381 CDD:279697
Tudor-knot 692..751 CDD:288553 15/35 (43%)
AT1G02740NP_171774.2 PLN00104 4..>101 CDD:215056 15/33 (45%)
CBD_MSL3_like 56..112 CDD:350846 17/47 (36%)
MRG 148..315 CDD:399022
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1624495at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.