DRSC/TRiP Functional Genomics Resources

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Protein Alignment htk and Arid3a

DIOPT Version :9

Sequence 1:NP_573330.3 Gene:htk / 32877 FlyBaseID:FBgn0085451 Length:2486 Species:Drosophila melanogaster
Sequence 2:NP_001101536.2 Gene:Arid3a / 314616 RGDID:1305299 Length:594 Species:Rattus norvegicus


Alignment Length:643 Identity:139/643 - (21%)
Similarity:234/643 - (36%) Gaps:151/643 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 PTG-QLRVGAVVEVRHPDRKELVEATITKIQDCSQYTVVFDDGDITTLRRTALCLKSGRH----- 117
            |.| |.|.....|.|.|:...:....:..               :..:|..|..|   ||     
  Rat    34 PAGVQARTTMTDEDREPENARMHRTQMAA---------------LAAMRAAAAGL---RHPSSPG 80

  Fly   118 -FNESETLDQLPLTHPEHFGNPVVGGRRGRRRGHLNEDSSEDD-----DESDAKEVVNEKEENIG 176
             ..:.:|.....|:.|...|:...|.......|||.:..|:||     :|.:.:|:..|:||...
  Rat    81 GSEDEDTAQGGTLSSPALHGSGQEGPGHTEGDGHLMDMGSDDDTKPKWEEQELEELGEEEEEEDE 145

  Fly   177 KVVCVETESKKKDKEKWFPALVVAPTAQATVRIRVKDEYLVRSFKDGRYYTVPKKEATEFTREVA 241
            .    :.|.:::|:|                     :|.|      |...:.....|..|||:..
  Rat   146 D----DFEEEEEDEE---------------------EEGL------GLPESASLGSAGLFTRKAP 179

  Fly   242 SKQDV-----PAVQAALEFLDSSVLPAHWDRDSLFGLTNISSD----DEG------------EID 285
            ..|..     |.:.:..|.|...  |||        .::::|.    |.|            |:|
  Rat   180 PTQTFRGDGGPRMLSGPERLGPG--PAH--------PSHVASQMPPPDHGDWTFEEQFKQLYELD 234

  Fly   286 SDSSDDEPHEEKDRFVAQLYKYMDDRGTPLNKVPSILSRDVDLYRLFRAVQKRGGYNRVTSQNQW 350
            :|       .::..|:..|:.:|..||||:|::|.:..:.:||:.|:..|.::||...|.::..|
  Rat   235 AD-------PKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLW 292

  Fly   351 KLIAMRLGFTPCTVSVMNLVKQAYKKFLQPYGDFHRKLGC-SMLMTSRNSNRSKGR--------- 405
            :.|...|.......|....::..|.|:|.||....|.|.. :.|..:.:|||.:||         
  Rat   293 REITKGLNLPTSITSAAFTLRTQYMKYLYPYECERRGLSSPNELQAAIDSNRREGRRQSFGGSLF 357

  Fly   406 --SLVRANS-VASPK------------------PMETMKTETIS--KLAQPNQTNVVASTSSSAA 447
              |...|:| ::|||                  |...:|.|..|  .:..|.:..|..:.....|
  Rat   358 AYSPSGAHSMLSSPKLPVTSLGLAASTNGSSITPTPKIKKEEDSAIPITVPGRLPVSLAGHPVVA 422

  Fly   448 AASVAASSTPARAVSTASQSAAEESGNTSESSVVVEPPKKQRKGSAASSQQGKVKSLVEKYEEKS 512
            |.:.|..:..|:|...|..:|.|:.....||:   |||:| :....|..||..::..|::.....
  Rat   423 AQAAAVQAAAAQAAVAAQAAALEQLREKLEST---EPPEK-KMALVADEQQRLMQRAVQQSFLAM 483

  Fly   513 TAVQATSSGTVAGSGASASAAAMPTTSAAASTATNLSSATSGGSATIATTAMNKDAESDLPLAKI 577
            ||....:....:.:..|....|:..|||..|.:.::|...:|   .:.|..:........|....
  Rat   484 TAQLPMNIRINSQASESRQDPAVNLTSANGSNSISMSVEMNG---IVYTGVLFAQPPPPTPPPAS 545

  Fly   578 KAAAVAAASTRHSMEKETNISSGSSASASSKANSAEMQRSRDASPSVAAPPSAGASTS 635
            ....|::..|.::|...|..|  .||.:|.:...|          .|:||..:..|.:
  Rat   546 SKGGVSSIGTNNTMGNRTGAS--GSAGSSGQVGLA----------GVSAPTMSSTSNN 591

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htkNP_573330.3 RBB1NT 171..262 CDD:285392 16/95 (17%)
ARID 299..381 CDD:279697 23/81 (28%)
Tudor-knot 692..751 CDD:288553
Arid3aNP_001101536.2 ARID_ARID3A 217..349 CDD:350642 37/138 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2744
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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