DRSC/TRiP Functional Genomics Resources

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Protein Alignment htk and ARID3B

DIOPT Version :9

Sequence 1:NP_573330.3 Gene:htk / 32877 FlyBaseID:FBgn0085451 Length:2486 Species:Drosophila melanogaster
Sequence 2:NP_001294868.1 Gene:ARID3B / 10620 HGNCID:14350 Length:561 Species:Homo sapiens


Alignment Length:558 Identity:124/558 - (22%)
Similarity:202/558 - (36%) Gaps:153/558 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 RGHLNEDSSEDD----DESDAKEV--VNEKE-ENIGKVVCVETESKKKDK----EKWFPALVVAP 201
            ||::|.:..|:|    ||....||  |.||| :...|...|:..:::..:    ....||..:.|
Human    84 RGNMNSEPEEEDGGLEDEDGDDEVAEVAEKETQAASKYFHVQKVARQDPRVAPMSNLLPAPGLPP 148

  Fly   202 TAQATVRIRVKDEYLVRSFKDGRYYTVPKKEATEFTREVASKQDVPAVQAALEFLDSSVLPAHWD 266
            ..|.......||                           |||.. |:|..|.:        .:|:
Human   149 HGQQAKEDHTKD---------------------------ASKAS-PSVSTAGQ--------PNWN 177

  Fly   267 RDSLF----GLTNISSDDEG----EIDSDSS-----DDEPHEEKDRFVAQLYKYMDDRGTPLNKV 318
            .|...    ||. .|.|.:|    ||..|.:     |.:|  |:..|:..|:.:|..||||:|::
Human   178 LDEQLKQNGGLA-WSDDADGGRGREISRDFAKLYELDGDP--ERKEFLDDLFVFMQKRGTPINRI 239

  Fly   319 PSILSRDVDLYRLFRAVQKRGGYNRVTSQNQWKLIAMRLGFTPCTVSVMNLVKQAYKKFLQPYGD 383
            |.:..:.:|||.|::.|.::||...:.::..|:.|...|.......|....::..|.|:|..|..
Human   240 PIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYEC 304

  Fly   384 FHRKLGC-SMLMTSRNSNRSKGRSLVRANSVASPKPMETMKTETISKLAQPNQTNVVASTSSSAA 447
            ..:.|.. :.|..:.:.||.:||....::|:....|                     |:.:::||
Human   305 EKKALSSPAELQAAIDGNRREGRRPSYSSSLFGYSP---------------------AAATAAAA 348

  Fly   448 AASVAASSTPARAVSTASQSAAEESGNTSESSVVVEPPKKQRKG------------------SAA 494
            |.:.|..|.|..........:   |..|:.||..:.|....|||                  :.|
Human   349 AGAPALLSPPKIRFPILGLGS---SSGTNTSSPRISPATTLRKGDGAPVTTVPVPNRLAVPVTLA 410

  Fly   495 SSQQGKVKSLVEKYEEKSTAVQATSSGTVAGSGAS-------------------ASAAAMP---- 536
            |.|.|...:.:|:..|:      ..||..|...||                   :.|..:|    
Human   411 SQQAGTRTAALEQLRER------LESGEPAEKKASRLSEEEQRLVQQAFQRNFFSMARQLPMKIR 469

  Fly   537 ------TTSAAASTATNLSSATSGGSATIATTAMNKDAESDLPLAKIKAAAVAAASTRHSMEKET 595
                  ..:.|::.|.||::::.|        ::|...  |:..........|.....|.:....
Human   470 INGRAEDRAEASAAALNLTTSSIG--------SINMSV--DIDGTTYAGVLFAQKPVVHLITGSA 524

  Fly   596 NISSGSSASASSKANSAEMQRSRDASPSVAAPPSAGAS 633
            ..|.|||||:||.::.:....|...:||  |.||...|
Human   525 PQSLGSSASSSSSSHCSPSPTSSRGTPS--AEPSTSWS 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htkNP_573330.3 RBB1NT 171..262 CDD:285392 16/95 (17%)
ARID 299..381 CDD:279697 23/81 (28%)
Tudor-knot 692..751 CDD:288553
ARID3BNP_001294868.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..36
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 53..122 14/37 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 136..179 13/78 (17%)
Interaction with RB1. /evidence=ECO:0000269|PubMed:10446990 203..365 43/184 (23%)
BRIGHT 216..305 CDD:128777 26/90 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 370..397 8/26 (31%)
Interaction with ARID3A. /evidence=ECO:0000269|PubMed:17400556 490..513 3/32 (9%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 523..561 15/40 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2744
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1374
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.840

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