DRSC/TRiP Functional Genomics Resources

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Protein Alignment htk and arid4b

DIOPT Version :9

Sequence 1:NP_573330.3 Gene:htk / 32877 FlyBaseID:FBgn0085451 Length:2486 Species:Drosophila melanogaster
Sequence 2:XP_005173089.1 Gene:arid4b / 100537923 ZFINID:ZDB-GENE-160607-1 Length:1240 Species:Danio rerio


Alignment Length:1559 Identity:402/1559 - (25%)
Similarity:585/1559 - (37%) Gaps:494/1559 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQQMDDPPSLPVGTEVSAKYKGAFCEAKVSKVVRNIKVKVAYKQGLGSGIVSDDAIKAPTGQLRV 65
            |:.:::||.|.|||:|||||:|||||||:....|.:|.||.::....:..|.|:.|:   |.|:|
Zfish     1 MKTLEEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKAKVTFRPDASTAEVHDEHIR---GLLKV 62

  Fly    66 GAVVEVRHPDRKELVEATITKIQDCSQYTVVFDDGDITTLRRTALCLKSGRHFNESETLDQLPLT 130
            |||||.|:.| ....||||.|:.|.|.|||||||||..||||::||||..|||.||||||:||||
Zfish    63 GAVVEARNQD-GVYQEATINKLTDASLYTVVFDDGDEKTLRRSSLCLKGARHFAESETLDRLPLT 126

  Fly   131 HPEHFGNPVVG--GRRGRRRGH-LNED----SSEDDDESDAKEVVNEKEENIGKVVCVE---TES 185
            :|||||.||:|  |.||.||.: :.|:    ||.:::|.|.:    :.||..|||||||   |..
Zfish   127 NPEHFGTPVIGKKGNRGGRRSNPIQEEESSSSSSEEEEGDQQ----QNEELYGKVVCVEGVLTND 187

  Fly   186 KKKDKEKWFPALVVAPTAQATVRIRVKDEYLVRSFKDGRYYTVPKKEATEFTREVASKQDV---P 247
            ||  |..|:||||::|.....|.:: ||...|||||||::|||.:|:..|...:.|.|.|.   |
Zfish   188 KK--KSTWYPALVISPDCHEDVTLK-KDNVFVRSFKDGKFYTVLRKDIRELDEDKAPKADAGLKP 249

  Fly   248 AVQAALEFLDSSVLPAHW-----DRDSLFGLTNISSDDEGEIDSDSSDDEPH------------E 295
            |:.||.||..:..:|..|     |..|       ||:||.|.:.:..::|..            |
Zfish   250 ALDAAWEFQRNGAVPNTWRTEVKDESS-------SSEDEEEEEEEEQEEEASSEEEEEEVEPFPE 307

  Fly   296 EKDRFVAQLYKYMDDRGTPLNKVPSILSRDVDLYRLFRAVQKRGGYNRVTSQNQWKLIAMRLGFT 360
            |||.|:.||||:|:|||||:||.|.:..::::|::|:|.|.|.||::.:.|.:.||.:...||  
Zfish   308 EKDNFLQQLYKFMEDRGTPINKRPVLGYKNLNLFKLYRLVHKLGGFDNIESGSVWKQVYQDLG-- 370

  Fly   361 PCTVSVMNL-----VKQAYKKFLQPYGDFHRKLGCSMLMTSRNSNRSKGRSLVRANSVASPKPME 420
               :.|:|.     ||.||:|:|..:.|:....|.|.                            
Zfish   371 ---IPVLNSAAGYNVKCAYRKYLYGFEDYCTSTGISF---------------------------- 404

  Fly   421 TMKTETISKLAQPNQTNVVASTSSSAAAASVAASSTPARAVSTASQSAAEESGNTSESSVVVEPP 485
                    ::..|.:|...||..:...|..|.:                  :|||    |.:..|
Zfish   405 --------RMDLPYKTGEKASCKTEVKAEEVIS------------------AGNT----VSLNTP 439

  Fly   486 KKQRKGSAASSQQGKVKSLVEKYEEKSTAVQATSSGTVAGSGASASAAAMPTTSAAASTATNLSS 550
            ::.             ||:.|  .|:|                                      
Zfish   440 EEH-------------KSITE--SERS-------------------------------------- 451

  Fly   551 ATSGGSATIATTAMNKDAESDLPLAKIKAAAVAAASTRHSMEKETNISSGSSASASSKANSAEMQ 615
                                               .|||.:::|                     
Zfish   452 -----------------------------------CTRHLLKEE--------------------- 460

  Fly   616 RSRDASPSVAAPPSAGASTSGAAATAQTASNKKEKHQRSKQADKEKDKDKEEKQA-SSGKRK--- 676
                 ......|....|..||        .||:::    |.|::|.:.::|.||. |:|:..   
Zfish   461 -----KTETVTPCEEKADISG--------ENKEDE----KHAEEENEMNEEVKQCMSTGETDVTE 508

  Fly   677 --KEKISVEKID---TGDF------------VVGIGDKLKVNYHEKKSPSSHGSTYEAKVIEISV 724
              ||:...|..|   :||.            ....|.|::|.|...:|.    .||:|.|.|.::
Zfish   509 DVKEEPCEEPDDKDLSGDVSSQEWEEGQEFECYPPGMKVQVRYGRGRSL----KTYDATVKESNL 569

  Fly   725 QRGVPMYLVHYTGWNNRYDEWVPRERIAENLTKG------------------------------S 759
            :.|..:|||||.|||.|||||:..::|.....|.                              .
Zfish   570 EGGEVLYLVHYCGWNVRYDEWIKADKIVRPANKNVPKIKHRKKIKNKAERERDRIERLADREDLP 634

  Fly   760 KQKTRTISTSSANSGSGGGGGGGGGGGGGGGGGGGSLLVQGSQPPGVSDKQPGKDGCSKMSP--S 822
            ..|.|....|..|||.                                      |..|||..  .
Zfish   635 SSKNRINRLSKVNSGG--------------------------------------DVFSKMEECVD 661

  Fly   823 SGNSTGPGAPSLSGSLGGASSTPSLLSTVVKTPPTGGAKR---------------GRGRSDSMPP 872
            .||.......|:...|.|:.|:            |..::|               |..::|  ||
Zfish   662 KGNQQSIEITSILNGLPGSDSS------------TDDSEREEDEDADHDEDDDHPGAHKAD--PP 712

  Fly   873 RSTTPSSVVAHSGRTKSPAASQPQLQQQMKKRPTRVVPGTTTPRRVSDASMASESDSDSDEPVRR 937
            :|       .|..:..||..: |:.....::.|| :...|..|:|       .|.|:|:... ||
Zfish   713 QS-------QHWEKNSSPPEA-PKTPADAEQEPT-LQDSTEAPKR-------KELDTDASAG-RR 760

  Fly   938 PKRQSAKDKPQAGKAQPPGKGR------------LASSASSTAPAAHPSDDSEEDEE---EEEPS 987
            .|.::....|..||.:....|.            ...|:|...|..||.:.|...::   .:|.|
Zfish   761 KKAENTSKSPAKGKTRNSRGGEWLQSGSPKKLEDRGESSSEDEPKGHPKNKSSPSKKYNGVKEKS 825

  Fly   988 AARAASSKQQQQQASSLRG--SRAGGNRAMSSGAASAKGRDYDLSEIRSELKGFQPKLLTNAASN 1050
            .:|.|..:..:::|....|  .|:.|.|        .||:    .::.|.::...||.......:
Zfish   826 KSRGAFWEIPEKRAKVSAGIEERSPGCR--------TKGQ----KDVWSSIQVQWPKKTLKELFS 878

  Fly  1051 EERKDLAKKEPSDEPALQDIKKEPKLESSAKSSSTELSSETESYADEDSQSSDYRKQLKGSGAGK 1115
            :...:.|...|...|           |:.::|:..|...|.|....::..||.....|.......
Zfish   879 DSDTEAANSPPPAGP-----------EACSESARDEEEEEEEEEKLQEHPSSGTNSVLNTPPTTP 932

  Fly  1116 KEPTAS--PSKLHHE---PVTKRELA-------VKEEPLKIEPKTEPKEEETKSKPFLS-GADIK 1167
            :.|.|:  |:::..|   |.....||       :.||||..||.....|.::.:....| |.:|:
Zfish   933 ESPAAAEGPAEILPEVRAPSPPAALAASPPPVSLPEEPLMEEPAGGRSESDSSTVEVESLGGEIQ 997

  Fly  1168 ----PTALIAPARF----------GNTSAAQAASSSGSSSTTAKYTSVIVEKPLTIGG---KKSV 1215
                .....:|::.          .|.|...:.||...|...||.:|.......:.||   ||..
Zfish   998 EMNAEEGAGSPSKAFDGNMSCNSNSNCSLTLSNSSQQESEQKAKASSSQKRHKESQGGGATKKHK 1062

  Fly  1216 EQHVPKKAELLKKQSGGAGGTAASSSAASQESKKFAEPV----ASLKVEMPAACSPSSSSSSSSS 1276
            ..|  |...|..|:|..|..::.|......||...:.||    |.||..:...||..:..|....
Zfish  1063 RSH--KNLSLQPKKSRKAAHSSDSEDQCISESTAKSPPVKSSGAELKSSITHKCSSRTPPSGQQR 1125

  Fly  1277 FCSTGSAVSSSSATRSLPDMSKLEISSGTVPGATPGAAALQ-------------PSNVAQVSSSG 1328
            :........|...||....||.||..|     :....:.||             .|.||.:....
Zfish  1126 YHKHTDTEHSHGRTRWSFQMSDLEKMS-----SLERISFLQEKLQDIRNHYLLLKSEVASIDRRR 1185

  Fly  1329 AAKESKYSSSGGAAAGSGISMRKLLSSDVYEFKDT--EPFEFEKRISPMASVGGTVAAAATAAG 1390
            ...:.|...:|.|||.|..|.....||.......|  ||               ||:||:..||
Zfish  1186 KRIKKKERETGAAAASSSSSSSPSSSSLTAAVMLTLAEP---------------TVSAASQTAG 1234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htkNP_573330.3 RBB1NT 171..262 CDD:285392 43/96 (45%)
ARID 299..381 CDD:279697 34/86 (40%)
Tudor-knot 692..751 CDD:288553 24/58 (41%)
arid4bXP_005173089.1 TUDOR 60..109 CDD:197660 31/49 (63%)
RBB1NT 170..264 CDD:285392 43/96 (45%)
ARID 309..394 CDD:198082 36/89 (40%)
Tudor-knot 543..596 CDD:288553 24/56 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594219
Domainoid 1 1.000 176 1.000 Domainoid score I3569
eggNOG 1 0.900 - - E1_KOG2744
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 389 1.000 Inparanoid score I1952
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003167
OrthoInspector 1 1.000 - - otm26200
orthoMCL 1 0.900 - - OOG6_106607
Panther 1 1.100 - - O PTHR13964
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1374
SonicParanoid 1 1.000 - - X2560
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.780

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