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Protein Alignment Pvf1 and Vegfb
DIOPT Version :9
Sequence 1: | NP_523407.1 |
Gene: | Pvf1 / 32876 |
FlyBaseID: | FBgn0030964 |
Length: | 325 |
Species: | Drosophila melanogaster |
Sequence 2: | XP_006230972.1 |
Gene: | Vegfb / 89811 |
RGDID: | 619799 |
Length: | 207 |
Species: | Rattus norvegicus |
Alignment Length: | 96 |
Identity: | 25/96 - (26%) |
Similarity: | 47/96 - (48%) |
Gaps: | 8/96 - (8%) |
- Green bases have known domain annotations that are detailed below.
Fly 140 ASCSPQPTIVELKPPAEDEANYYYMPACTRISRCNGCCGSTLISCQPTEVEQVQLRVRKVDRAAT 204
|:|.|:..:|.|............:|:|..:.||.|||....:.|.|....||::::..:...::
Rat 45 ATCQPREVVVPLSMELMGNVVKQLVPSCVTVQRCGGCCPDDGLECVPIGQHQVRMQILMIQYPSS 109
Fly 205 S-GRRPFTIITVEQHTQCRCDCRTKAEDCNV 234
. |. :::|:|:| |:||.|.::..|
Rat 110 QLGE-----MSLEEHSQ--CECRPKRKESAV 133
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
Pvf1 | NP_523407.1 |
PDGF |
142..223 |
CDD:278756 |
19/81 (23%) |
Vegfb | XP_006230972.1 |
PDGF |
45..126 |
CDD:197537 |
22/87 (25%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1364454at2759 |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
1 |
0.960 |
- |
- |
|
|
|
3 | 2.880 |
|
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