DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pvf1 and VEGFA

DIOPT Version :10

Sequence 1:NP_523407.1 Gene:Pvf1 / 32876 FlyBaseID:FBgn0030964 Length:325 Species:Drosophila melanogaster
Sequence 2:NP_001020537.2 Gene:VEGFA / 7422 HGNCID:12680 Length:412 Species:Homo sapiens


Alignment Length:189 Identity:42/189 - (22%)
Similarity:63/189 - (33%) Gaps:69/189 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 CSPQPTIVELKPPAEDEANYYYMPACTRISRCNGCCGSTLISCQPTEVEQVQLRVRKV--DRAAT 204
            |.|..|:|::.....||..|.:.|:|..:.||.|||....:.|.|||...:.:::.::  .:...
Human   232 CHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQH 296

  Fly   205 SGRRPFTIITVEQHTQCRCDCRTKAE--------------------------------------- 230
            .|...|.     ||.  :|:||.|.:                                       
Human   297 IGEMSFL-----QHN--KCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVYVGARCCLM 354

  Fly   231 --------DCNVYQSYRKDL-------CRCECHNTDARDKCLEQAENKYWVDDNCTCVC 274
                    .|......||.|       |:|.|.|||:|.|..:...|:.      ||.|
Human   355 PWSLPGPHPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNER------TCRC 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pvf1NP_523407.1 PDGF 140..226 CDD:238079 23/85 (27%)
VEGFANP_001020537.2 PDGF 230..312 CDD:197537 24/86 (28%)
VEGF_C 364..412 CDD:405273 16/50 (32%)

Return to query results.
Submit another query.