DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pvf1 and Pdgfd

DIOPT Version :10

Sequence 1:NP_523407.1 Gene:Pvf1 / 32876 FlyBaseID:FBgn0030964 Length:325 Species:Drosophila melanogaster
Sequence 2:NP_076452.1 Gene:Pdgfd / 66018 RGDID:621880 Length:370 Species:Rattus norvegicus


Alignment Length:176 Identity:42/176 - (23%)
Similarity:63/176 - (35%) Gaps:25/176 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 PSAAPGALEGSCCQGAAAEAGTPLTL-----PLSVSAELTNVTAD----YDVSGEMPSSKENFKR 127
            ||.....|.......|.||..|...|     |.|...:|.|:..|    ...|.....||.:..|
  Rat   198 PSVMDSTLTADALDKAIAEFDTVEDLLKYFNPASWQDDLENLYMDTPRYRGRSYHERKSKVDLDR 262

  Fly   128 SIMKSTVRNATPASCSPQPTIVELKPPAEDEANYYYMPACTRISRCNGCCG-STL----ISCQPT 187
              :...|:.   .||:|:...|.|:...: ..|..:.|.|..:.||.|.|| .||    .:|...
  Rat   263 --LNDDVKR---YSCTPRNHSVNLREELK-LTNAVFFPRCLLVQRCGGNCGCGTLNWKSCTCSSG 321

  Fly   188 EVEQVQLRVRKVD-----RAATSGRRPFTIITVEQHTQCRCDCRTK 228
            :..:....|.|.:     |...:.......|.::.|.:|.|.|.::
  Rat   322 KTVKKYHEVLKFEPGHFKRRGKAKNMALVDIQLDHHERCDCICSSR 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pvf1NP_523407.1 PDGF 140..226 CDD:238079 23/95 (24%)
PdgfdNP_076452.1 CUB 55..169 CDD:238001
PDGF 270..365 CDD:238079 23/95 (24%)
Blue background indicates that the domain is not in the aligned region.

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