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Protein Alignment Pvf1 and PDGFC
DIOPT Version :9
Sequence 1: | NP_523407.1 |
Gene: | Pvf1 / 32876 |
FlyBaseID: | FBgn0030964 |
Length: | 325 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_057289.1 |
Gene: | PDGFC / 56034 |
HGNCID: | 8801 |
Length: | 345 |
Species: | Homo sapiens |
Alignment Length: | 100 |
Identity: | 27/100 - (27%) |
Similarity: | 45/100 - (45%) |
Gaps: | 22/100 - (22%) |
- Green bases have known domain annotations that are detailed below.
Fly 141 SCSPQPTIVELKPPAEDEANYYYMPACTRISRCNGCCGSTLISCQ-----PTEV-----EQVQLR 195
||:|:...|.::...: ..:..:.|.|..:.||.|.|...|.:|. |::| |.:|||
Human 249 SCTPRNFSVSIREELK-RTDTIFWPGCLLVKRCGGNCACCLHNCNECQCVPSKVTKKYHEVLQLR 312
Fly 196 ----VRKVDRAATSGRRPFTIITVEQHTQCRCDCR 226
||.:.::.|. :.:|.|.:|.|.||
Human 313 PKTGVRGLHKSLTD-------VALEHHEECDCVCR 340
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
Pvf1 | NP_523407.1 |
PDGF |
142..223 |
CDD:278756 |
23/94 (24%) |
PDGFC | NP_057289.1 |
CUB |
49..162 |
CDD:238001 |
|
PDGF |
248..340 |
CDD:238079 |
25/98 (26%) |
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
1 |
1.100 |
- |
- |
LDO |
PTHR11633 |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
User_Submission |
0 | 0.000 |
Not matched by this tool. |
|
2 | 2.010 |
|
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