DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pvf1 and vegfbb

DIOPT Version :9

Sequence 1:NP_523407.1 Gene:Pvf1 / 32876 FlyBaseID:FBgn0030964 Length:325 Species:Drosophila melanogaster
Sequence 2:XP_003200919.3 Gene:vegfbb / 100535766 ZFINID:ZDB-GENE-091204-285 Length:152 Species:Danio rerio


Alignment Length:91 Identity:24/91 - (26%)
Similarity:45/91 - (49%) Gaps:11/91 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 CSPQPTIVELKPPAEDEANYYYMPACTRISRCNGCCGSTLISC----QPTEVEQVQLRVRKVDRA 202
            |.|:.|:|:::....:....:.:|:|..:.||.|||....:.|    :.|.:  :||:....|  
Zfish    66 CKPRETLVKVEDEFSEVMLGHVVPSCVPLQRCGGCCSDEAMVCVNVAKHTTI--IQLQQYATD-- 126

  Fly   203 ATSGRRPFTIITVE--QHTQCRCDCR 226
             :.|....:||.:.  :|:||:|..|
Zfish   127 -SEGNMAESIIELPFVEHSQCQCRFR 151

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pvf1NP_523407.1 PDGF 142..223 CDD:278756 22/86 (26%)
vegfbbXP_003200919.3 PDGF 66..148 CDD:278756 22/86 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 57 1.000 Domainoid score I10814
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1364454at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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