DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pvf1 and pdgfd

DIOPT Version :10

Sequence 1:NP_523407.1 Gene:Pvf1 / 32876 FlyBaseID:FBgn0030964 Length:325 Species:Drosophila melanogaster
Sequence 2:XP_073780204.1 Gene:pdgfd / 100535718 ZFINID:ZDB-GENE-071217-1 Length:380 Species:Danio rerio


Alignment Length:99 Identity:24/99 - (24%)
Similarity:42/99 - (42%) Gaps:12/99 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   141 SCSPQPTIVELKPPAEDEANYYYMPACTRISRCNGCCGS-----TLISCQPTEVEQVQLRVRKVD 200
            ||:|:...|.|:...: ..|..:.|.|..:.||.|.||.     ...:|...:..:....|.|..
Zfish   280 SCTPRNYSVNLREELK-ATNAVFFPRCLLVQRCGGNCGCGTDNWNSCTCSSGKTVRKLHEVLKFS 343

  Fly   201 RAAT----SGRRPFTI--ITVEQHTQCRCDCRTK 228
            ..|:    ..|..:|:  |.::.|.:|.|.|:::
Zfish   344 PGASFYRKKSRARWTLEEIYLQHHERCDCVCQSR 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pvf1NP_523407.1 PDGF 140..226 CDD:238079 23/95 (24%)
pdgfdXP_073780204.1 None

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