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Protein Alignment Pvf1 and pdgfb
DIOPT Version :9
Sequence 1: | NP_523407.1 |
Gene: | Pvf1 / 32876 |
FlyBaseID: | FBgn0030964 |
Length: | 325 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001297028.1 |
Gene: | pdgfb / 100492827 |
XenbaseID: | XB-GENE-487583 |
Length: | 240 |
Species: | Xenopus tropicalis |
Alignment Length: | 173 |
Identity: | 41/173 - (23%) |
Similarity: | 66/173 - (38%) |
Gaps: | 26/173 - (15%) |
- Green bases have known domain annotations that are detailed below.
Fly 77 GALEGSCCQGAAAEAGTPLTLPL----------SVSAELTNVTADYDVSGE-------------M 118
|.|...|...|.:..|.|:...: |:| ||..|.....|..| .
Frog 5 GLLVSLCLLLAVSAEGDPIPEEMFKKISEGAVTSIS-ELRRVLQIDSVDDEDDLNYASIHQTRSS 68
Fly 119 PSSKENFKRSIMKSTVRNATPASCSPQPTIVELKPPAED--EANYYYMPACTRISRCNGCCGSTL 181
|::..:..|.|.......|..|.|.|:..:.|:.....| .||:...|.|..:.||:|||.|..
Frog 69 PTNSSSHSRVIRSLDAEKAVIAECKPRVEVFEISRKIVDPTNANFLVWPPCVEVQRCSGCCNSKN 133
Fly 182 ISCQPTEVEQVQLRVRKVDRAATSGRRPFTIITVEQHTQCRCD 224
:.|.||.:....::|.|:.......::...::.:|.|..|:|:
Frog 134 MRCAPTRIHVRHVQVNKIFITPKGKKQVKVVVPLEDHHDCKCE 176
|
Known Domains:
Indicated by green bases in alignment.
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
1 |
1.000 |
58 |
1.000 |
Domainoid score |
I10601 |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1364454at2759 |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
1 |
1.000 |
- |
- |
|
otm49358 |
Panther |
1 |
1.100 |
- |
- |
O |
PTHR11633 |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
1 |
1.000 |
- |
- |
|
X1138 |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
6 | 6.020 |
|
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