DRSC/TRiP Functional Genomics Resources

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Protein Alignment bnb and Pkd1l3

DIOPT Version :10

Sequence 1:NP_523406.1 Gene:bnb / 32872 FlyBaseID:FBgn0001090 Length:442 Species:Drosophila melanogaster
Sequence 2:XP_038954217.1 Gene:Pkd1l3 / 100362565 RGDID:2324490 Length:2183 Species:Rattus norvegicus


Alignment Length:435 Identity:90/435 - (20%)
Similarity:165/435 - (37%) Gaps:68/435 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 PVPDE--EV---AIQPDSGAKAELLTKTVLPTAVEPAPLKPEAEKPAETKTIEAKAAVP----EQ 75
            |.|.|  |:   .|.|.|         :|||.|.....:.........|..:.|.::.|    :.
  Rat   191 PAPPELSEILCFPIDPVS---------SVLPKATHKMTITSPTRSSQVTSVVTASSSPPQVTSDT 246

  Fly    76 PDVNANPSPSTPAAEPAKEINSVELKSSAPDVETAPA-----IPEKKTLPEEAK--PAQENAPVE 133
            |..:::| |...:..||...:..::.|..|...::|.     .|...:||:...  ||..:.|  
  Rat   247 PASSSSP-PQVTSDTPASSSSPPQVTSDTPSSSSSPPQVTSDTPASSSLPQVTSDTPASSSPP-- 308

  Fly   134 AEKKQEKTARTEAEPTVEAQPQATKAIEQAPEAPAANAEVQKQVVDEVKPQEPKIDAKSAEEPAI 198
                 :.|:.|   |...:.||.|.      :.||:::..|...........|::.:.::...:.
  Rat   309 -----QVTSDT---PASSSPPQVTS------DTPASSSPPQVTSDTPASSSPPQVTSDTSASSSP 359

  Fly   199 PAVVAAEKETPVPEQPARQERINEIEQKDAKKDAAVAEEPAKAAEATP-TAAPEAATK----SDS 258
            |.|.:....:..|.|.......:.|..: ...|..|:..|.:....|| :::|...|.    |.|
  Rat   360 PQVTSDTPASSSPPQVTSDTPASSITPQ-VTTDTPVSSSPPQVTSDTPASSSPPQVTSDTPASSS 423

  Fly   259 NIQVIAPEKKSIESSPAAAAASPAAQAA--QAKSGEAPKPVDQQKSTET-VAESAPVLKTNAPLA 320
            .:||.:....| .|.|...:.:||:.::  |..|......:..|.:::| |:.|.|.:.::.|.:
  Rat   424 PLQVTSDTTAS-SSPPQVTSDTPASSSSPLQVTSDTPASSITPQVTSDTPVSSSPPQVTSDTPAS 487

  Fly   321 PAGATKVTEAVKEQEKEQPAADTAAKALPEQKKTEETAAPAGAPEPTAAVAPAAVPEAKKIDEAP 385
            .:...:||            :||.|.:....:.|.:|.:.:.:|....:..||:....:...:.|
  Rat   488 SSSPPQVT------------SDTPASSSSPPQVTSDTPSSSSSPPQVTSDTPASSSLPQVTSDTP 540

  Fly   386 AAET---VVKGEEAIAKPIAQSPSAEPKKSSEEKSDKSESKVDES 427
            |:.:   |.....|.:.| .|..|..|..||......|::.|..|
  Rat   541 ASSSPPQVTSDTPASSSP-PQVTSDTPASSSSPLQVTSDTPVPNS 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bnbNP_523406.1 PTZ00121 <35..>423 CDD:173412 81/409 (20%)
Pkd1l3XP_038954217.1 CLECT 37..144 CDD:153057
Herpes_BLLF1 <215..601 CDD:282904 79/402 (20%)
GPS 1002..1040 CDD:460350
PLAT_polycystin 1111..1230 CDD:238850
Polycystin_dom 1688..1874 CDD:466668
PKD_channel 1879..2096 CDD:462341
Blue background indicates that the domain is not in the aligned region.

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