DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6961 and AT1G66260

DIOPT Version :9

Sequence 1:NP_573325.1 Gene:CG6961 / 32869 FlyBaseID:FBgn0030959 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_001185329.1 Gene:AT1G66260 / 842943 AraportID:AT1G66260 Length:295 Species:Arabidopsis thaliana


Alignment Length:179 Identity:44/179 - (24%)
Similarity:69/179 - (38%) Gaps:49/179 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   320 RKAVGGGGGSDSDSGTDSDGDAAAPSKNKRRSPSPLSLRTS------------------NTKD-- 364
            ||:..|.||   .:|....|....|   .||.|..::.|.|                  |..|  
plant    33 RKSGRGRGG---PNGVVGGGRGGGP---VRRGPLAVNTRPSSSFSINKLARRKRSLPWQNQNDLY 91

  Fly   365 --------------GYRLLVSNLHTNVTTADIRELFSDIGPV------YDARVVRPGTAEVIYKS 409
                          |..:.::||...||..|||||:::||.:      ||......|:|||:|..
plant    92 EETLRAVGVSGVEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMR 156

  Fly   410 LEHAEKAVDTYHHRQFDDQPMHCVLVNPHSSRRSVHKASSRTVTTNSSG 458
            ...|.:|:..|::...|.:||...::..::....|   ::|...|..:|
plant   157 RSDAIQAMRKYNNVLLDGRPMKLEILGGNTESAPV---AARVNVTGLNG 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6961NP_573325.1 RRM 256..>443 CDD:223796 40/162 (25%)
RRM_SKAR 366..434 CDD:241125 24/73 (33%)
AT1G66260NP_001185329.1 RRM <107..>181 CDD:223796 24/73 (33%)
RRM_THOC4 107..181 CDD:241124 24/73 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0533
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19965
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.960

Return to query results.
Submit another query.