DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6961 and Hnrnpm

DIOPT Version :10

Sequence 1:NP_573325.1 Gene:CG6961 / 32869 FlyBaseID:FBgn0030959 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_084080.1 Gene:Hnrnpm / 76936 MGIID:1926465 Length:729 Species:Mus musculus


Alignment Length:353 Identity:72/353 - (20%)
Similarity:124/353 - (35%) Gaps:101/353 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 SGIDARQLLLER--------KKARSAGPILIDDEEESFEPSHRARGKGVHIGQFGHRLSMSNHAD 145
            |.|:...|:::|        ......||:.:|....|.|          .:||...|:.      
Mouse   431 SEIERMGLVMDRMGSVERMGSSIERMGPLGLDHMASSIE----------RMGQTMERIG------ 479

  Fly   146 GTIQAKWDSDDGVVELGNHMLSGLRRTFDPRSHKPGKPFAPRRYIDLDNMQDLEDEEISRTL-HL 209
                      .||..:|..|..||.|...|              ||          .:.:|: .:
Mouse   480 ----------SGVERMGAGMGFGLERMAAP--------------ID----------RVGQTIERM 510

  Fly   210 GQ-MKQASPRYSIGGLDLNR------GDDVEMSMAPLNNKIDNNAFSIYEAARNRIERPSLTNRL 267
            |. :::..|.....||.::|      |..:| .|.|:   :|..|..:.....|.:||..|..  
Mouse   511 GSGVERMGPAIERMGLSMDRMVPTGMGASLE-RMGPV---MDRMATGLERMGANNLERMGLER-- 569

  Fly   268 VVGRSNSTKEPLERRHRDTVSTSKLPESLRSRLFVGKRDPHISHGIYANENRRKAVGGGGGSDSD 332
             :|.::..:..|||...:  |..::..::         .|.:..||   |....|:||.||:..|
Mouse   570 -MGANSLERMGLERMGAN--SLERMGPAM---------GPALGAGI---ERMGLAMGGAGGASFD 619

  Fly   333 SGTDSD----GDAAAPSKNKRRSPSPLSLRTSNTKDGYRLLVSNLHTNVTTADIRELFSDIGPVY 393
            ...:.:    |.:.|.|.......:|     ...:...::.|.||..:.|...:::.|::.|.|.
Mouse   620 RAIEMERGNFGGSFAGSFGGAGGHAP-----GVARKACQIFVRNLPFDFTWKMLKDKFNECGHVL 679

  Fly   394 DARV-----VRPGTAEVIYKSLEHAEKA 416
            .|.:     ...|...|.::|.|.||:|
Mouse   680 YADIKMENGKSKGCGVVKFESPEVAERA 707

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6961NP_573325.1 RRM_SKAR 366..434 CDD:410082 15/56 (27%)
HnrnpmNP_084080.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..65
HnRNP_M_NLS 40..69 CDD:463289
RRM1_hnRNPM 71..146 CDD:410058
RRM2_hnRNPM 203..278 CDD:410060
27 X 6 AA repeats of [GEVSTPAN]-[ILMV]-[DE]-[RH]-[MLVI]-[GAV] 399..607 47/246 (19%)
RRM3_hnRNPM 653..729 CDD:410062 15/55 (27%)
Blue background indicates that the domain is not in the aligned region.

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