DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6961 and hnrnpm

DIOPT Version :10

Sequence 1:NP_573325.1 Gene:CG6961 / 32869 FlyBaseID:FBgn0030959 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_001243560.1 Gene:hnrnpm / 555643 ZFINID:ZDB-GENE-030131-6898 Length:686 Species:Danio rerio


Alignment Length:452 Identity:88/452 - (19%)
Similarity:152/452 - (33%) Gaps:132/452 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 SGIDARQLLLERK--KARSAGPILID--------------------------DEEE----SFEPS 121
            :|:..|..:||.|  |:|..|.:..|                          ||:.    .|.|.
Zfish   227 AGMVVRADILEDKDGKSRGMGTVTFDMPIEAVQAVSMFNGQLLFNRVMHVKLDEKSLPKGDFAPP 291

  Fly   122 HRA-------RGKGVHIGQFG--------HRLSMSNHADGTIQAKWDSDDGVVELG--------- 162
            .||       .|.|:.:|..|        :|..|.|...|.:...  ...|:..:|         
Zfish   292 ERAPALPRGLSGVGLGLGPGGQPIDATQLNRGGMGNMGPGGMDGM--GYGGMGRMGGMDNFGGGG 354

  Fly   163 ------NHM----LSGLRRTFDPRSHKPG---KPFAPRRYIDL--DNMQDLEDEEISRTLHLGQM 212
                  |:|    .||:.|..|......|   :.|:.|..:.:  .|..|..|..:..::.:.:|
Zfish   355 GGGGGMNNMDRFGPSGMGRMNDMDRGMGGGFDRDFSGRNDMGMSRSNFGDSFDRGMGNSMGMDRM 419

  Fly   213 KQASPRYSIGGLD----------------------LNRGDDVEM-----------------SMAP 238
            .....|.| ||:|                      ::|..|::.                 ||..
Zfish   420 NSGMDRLS-GGIDRMGGGGGGGGMDRMGGGGGGGGMDRMSDLDRMGSSFDRMGSGLDRLGPSMDR 483

  Fly   239 LNNKIDNNAFSIYEAARNRIER--PSLTNRLVVGRSNSTKEPLERRHR--DTVSTSKLPESLRSR 299
            :.:.:|..:.|:........:|  .|..:|:..|...::...::|.:.  |.:.::      ..|
Zfish   484 MGSGLDRMSTSVDRMGPGGFDRLGSSSMDRMSGGMDFASPMGMDRMNTGLDRMGSN------FDR 542

  Fly   300 LFVGKRDPHISHGIYANENRRKAVGGGG-GSDSDSGTDSD-GDAAAPSKNKRRSPSPLSLRTSNT 362
            :..|..| ..|.|:....:....:|.|| |...|...|.| |:..:|.....:...|.| ..:|.
Zfish   543 MGSGGMD-RFSSGLDRMGSSMDRMGSGGIGGQFDRPGDMDRGNFGSPFGGSGQGGGPGS-GGANA 605

  Fly   363 KDGYRLLVSNLHTNVTTADIRELFSDIGPVYDARV-----VRPGTAEVIYKSLEHAEKAVDT 419
            :.|.::.|.||..:.|...:::.|:..|.|..|.:     ...|...|.:.:.|.||:|..|
Zfish   606 RKGCQIFVRNLPFDFTWKMLKDTFNSCGMVQYADIKMENGKSKGCGVVRFDNPETAERACRT 667

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6961NP_573325.1 RRM_SKAR 366..434 CDD:410082 15/59 (25%)
hnrnpmNP_001243560.1 RRM1_hnRNPM 49..124 CDD:410058
RRM2_hnRNPM 204..279 CDD:410060 9/51 (18%)
RRM3_hnRNPM 610..686 CDD:410062 15/58 (26%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.