Protein Alignment CG6961 and rbm-39

DIOPT Version :10

• Sequence 1: NP_573325.1
• Gene: CG6961 / 32869
• FlyBaseID: FBgn0030959
• Length: 474
• Species: Drosophila melanogaster
• Sequence 2: NP_500025.1
• Gene: rbm-39 / 176922
• WormBaseID: WBGene00021921
• Length: 580
• Species: Caenorhabditis elegans
• Alignment Length: 487
• Identity: 92/487 - (18%)
• Similarity: 140/487 - (28%)
• Gaps: 183/487 - (37%)

  Fly     1 MDIDLSLDEIIERKRGQRGY--------------RPLDRKFNANFSKPRQLLNKPFFKPSGARGS 51
            ||||..|:..:|..:..|..              |..|||.::..|:.|            :|..
 Worm     6 MDIDAMLEGGLEMAKNDRSQSRQRSPARSNRSRSRSKDRKSSSRRSRSR------------SRDR 58

  Fly    52 HSDMPAKRTFDARNTIAAKTRAKIADARDLINKSVRDSGIDARQLLLERKKARSAGPILIDDEEE 116
            ..|...:|...:|:.....||.: :.:|:......||.|...|:.....:..|.:.|    ...:
 Worm    59 RGDRGDRRRSRSRSKDRRTTRRR-SPSRERRRSRSRDRGAPRRRSRTRSRDRRRSPP----RRRD 118

  Fly   117 SFEPSHRARGKGVHIGQFGHRLSMSNHADGTIQAKWDSDDGVVELGNHMLSGLRRTFDPRSHKPG 181
            ...|..|:.|                                            |...|||..||
 Worm   119 RRTPPRRSPG--------------------------------------------RRSPPRSRLPG 139

  Fly   182 ------KPFAPRRYIDLDNMQDLEDEE-ISRTLHLGQM-KQASPRYSIGGLDLNRGDDVEMSMAP 238
                  .||.||.....:...:|..|| ..|||.:.|: :...||            |:|
 Worm   140 PERRDVMPFNPRHSPPKNAKLELTAEERDQRTLLIMQIARDTRPR------------DLE----- 187

  Fly   239 LNNKIDNNAFSIYEAARN-RIERPSLTNRLVVGRSNSTKEPLERRHRDTVSTSKLPESLRSRLFV 302
                   ..||...|.|: ||...|.|     |||                        :...:|
 Worm   188 -------EFFSAVGAVRDVRIITDSRT-----GRS------------------------KGICYV 216

  Fly   303 GKRDPH-ISHGIYANENRRKAVGGGGGSDSDSGTDSDGDAAAPSKNKRRSPSPLSLRTSNTKDGY 366
            ...|.. :..|:..|..|..     |.......|.::.:.||.|.    ..|.|.......|...
 Worm   217 EFWDEESVPLGLALNGQRLM-----GAPLQIQRTCAERNRAANSS----VASTLGFVAPGNKGPT 272

  Fly   367 RLLVSNLHTNVTTADIRELFSDIGPV------YDARVVRPGTAEVIYKSLEHAEKAVD------- 418
            .:||.|||..:....||::|...|.:      .|:.....|.|.:.:::.:.|:|:.:
 Worm   273 HVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLNNFEL 337

  Fly   419 -----------------------TYHHRQFDD 427
                                   :.|.|..||
 Worm   338 AGRCIRLSIKQESQAPAVKKEEASIHQRSLDD 369

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG6961	NP_573325.1	RRM_SKAR	366..434	CDD:410082	18/98 (18%)
rbm-39	NP_500025.1	SF-CC1	140..515	CDD:273721	57/292 (20%)