DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6961 and Cirbp

DIOPT Version :10

Sequence 1:NP_573325.1 Gene:CG6961 / 32869 FlyBaseID:FBgn0030959 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_001366350.1 Gene:Cirbp / 12696 MGIID:893588 Length:176 Species:Mus musculus


Alignment Length:201 Identity:46/201 - (22%)
Similarity:72/201 - (35%) Gaps:41/201 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 SDDGVVELGNHMLSGLRRTFDPRSHKPGKPFAPRRYIDLDNMQDLEDEEISRTLHLGQMKQASPR 218
            ||:|.:.:|     ||  :||.......:.|:  :|..:..:..::|.|..|:            
Mouse     3 SDEGKLFVG-----GL--SFDTNEQALEQVFS--KYGQISEVVVVKDRETQRS------------ 46

  Fly   219 YSIGGLDLNRGDDVEMSMAPLNNK-IDNNAFSIYEAARNRIERP------SLTNRLVVGRSNSTK 276
            ...|.:.....||.:.:|..:|.| :|.....:.:|.::...|.      |...|.......|..
Mouse    47 RGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRSRG 111

  Fly   277 EPLERRHRDTVSTSKLPESLRSRLFVGKRDPHISHGIYANENRRKAVG--GGGGSDSDS----GT 335
            ....|...|........|| ||..:.|.||      .||:.::..:.|  ..|||..||    |.
Mouse   112 RGFSRGGGDRGYGGGRFES-RSGGYGGSRD------YYASRSQGGSYGYRSSGGSYRDSYDSYGK 169

  Fly   336 DSDGDA 341
            .|..||
Mouse   170 SSSKDA 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6961NP_573325.1 RRM_SKAR 366..434 CDD:410082
CirbpNP_001366350.1 RRM_CIRBP_RBM3 6..85 CDD:409883 19/99 (19%)
Blue background indicates that the domain is not in the aligned region.

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